Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG05_RS01515 Genome accession   NZ_CP094079
Coordinates   295752..296801 (-) Length   349 a.a.
NCBI ID   WP_245070754.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe100     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 290752..301801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG05_RS01495 (MPG05_01495) rpsL 291601..292008 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG05_RS01500 (MPG05_01500) rpsG 292024..292491 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG05_RS01505 (MPG05_01505) fusA 292503..294581 (+) 2079 WP_245070752.1 elongation factor G -
  MPG05_RS01510 (MPG05_01510) - 295330..295548 (+) 219 WP_000744171.1 hypothetical protein -
  MPG05_RS01515 (MPG05_01515) waaF 295752..296801 (-) 1050 WP_245070754.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG05_RS01520 (MPG05_01520) hisS 296863..298191 (+) 1329 WP_245070756.1 histidine--tRNA ligase -
  MPG05_RS01525 (MPG05_01525) asd 298178..299218 (+) 1041 WP_154510402.1 aspartate-semialdehyde dehydrogenase -
  MPG05_RS01530 (MPG05_01530) - 299586..300332 (+) 747 Protein_296 DUF874 family protein -
  MPG05_RS01535 (MPG05_01535) - 300562..301305 (-) 744 WP_001871592.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39528.38 Da        Isoelectric Point: 9.7626

>NTDB_id=574226 MPG05_RS01515 WP_245070754.1 295752..296801(-) (waaF) [Helicobacter pylori strain Hpfe100]
MSVNAPKRMRILLRLPNWLGDGVMASSLFHTLKHHYPNAHFILVGPQMTCELFKKDEKIESVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVIAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPTSYYAEVSAILLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=574226 MPG05_RS01515 WP_245070754.1 295752..296801(-) (waaF) [Helicobacter pylori strain Hpfe100]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTCACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAATCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTTCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATTGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAACTTCTTATTACGCTGAAGTTTCTGCTATTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTGTTCAAT
AACGCTTACAATCTGTGTGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364