Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG56_RS05440 Genome accession   NZ_CP094076
Coordinates   1145242..1147167 (+) Length   641 a.a.
NCBI ID   WP_245043384.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1140242..1152167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG56_RS05415 (MPG56_05415) hofB 1140465..1141904 (-) 1440 WP_245043380.1 outer membrane beta-barrel protein HofB -
  MPG56_RS05420 (MPG56_05420) pyrB 1142175..1143098 (-) 924 WP_245043381.1 aspartate carbamoyltransferase -
  MPG56_RS05425 (MPG56_05425) - 1143165..1143680 (+) 516 WP_000523557.1 hypothetical protein -
  MPG56_RS05430 (MPG56_05430) - 1143680..1144387 (+) 708 WP_245043382.1 TlyA family RNA methyltransferase -
  MPG56_RS05435 (MPG56_05435) - 1144353..1145195 (+) 843 WP_245043383.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG56_RS05440 (MPG56_05440) recP/tkt 1145242..1147167 (+) 1926 WP_245043384.1 transketolase Machinery gene
  MPG56_RS05445 (MPG56_05445) - 1147176..1149512 (+) 2337 WP_245044480.1 PD-(D/E)XK nuclease family protein -
  MPG56_RS05450 (MPG56_05450) - 1149509..1152079 (+) 2571 WP_245043385.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70466.64 Da        Isoelectric Point: 6.5780

>NTDB_id=574161 MPG56_RS05440 WP_245043384.1 1145242..1147167(+) (recP/tkt) [Helicobacter pylori strain Hpfe102]
MQLNNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVMVVLNLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKTKE
KIHALKGFDFSAINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQIALSLSAPSGLILSRQNLPVLDEVSKEQVLKGAYVKYDAKNPVITLVASGSEVSLALESAKRLERENIPT
QVVSAPCFDLLVEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=574161 MPG56_RS05440 WP_245043384.1 1145242..1147167(+) (recP/tkt) [Helicobacter pylori strain Hpfe102]
ATGCAATTGAATAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTGCGCTTTTTGTGCGCGGACATGATAGA
TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGACTAGCCGATGTGATGGTGGTTTTAAACTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTCAACAGAGACAGACTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCCTAGAAGATTTAAAGCGTTTCAGGCAATTACATTCTAAAACCCCAGGACACCC
CGAATTGCACCACACTGAAGGCATTGAGATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTAGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCATCTCAACCTGAACAATCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTCAGCGAACAAGTCAAGATGCGGTTTTTAGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCACCCTTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAACGCTCAAATCAACCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCTTTATGGGAAAAATCCTTAAGCCCTAAAACAAAAGAA
AAGATCCATGCGTTAAAGGGTTTTGATTTTAGCGCCATTAATTACCCCGTTTTCAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGGAGCGCGGATTTAGCCCCAT
CTAACAACACGCAATTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACCAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCGACGCACCAGCCTATAGAACAATTGAGCCATTTACGCGCTTTGCCCAATTTTTACGCTTTCAGACCTAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAATAGCGTTAAGTTTGAGCGCTCCTAGTGGGCTTATTTTATCGCGTCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGCGCGTATGTTAAATATGATGCTAAAAATCCCGTTA
TCACGCTGGTTGCGAGCGGGAGTGAAGTCTCTTTGGCTTTAGAGAGCGCTAAAAGGTTAGAGCGAGAAAATATCCCCACT
CAAGTAGTGAGCGCACCATGCTTTGATTTATTGGTGGAACAAGATGAAAGCTATCTTAAAGAACTTTTTAAGGGTAAAGT
TTTAGTCATTGAAGCGAGCCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-320)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.321

100

0.42