Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   MPG56_RS02485 Genome accession   NZ_CP094076
Coordinates   506379..507614 (+) Length   411 a.a.
NCBI ID   WP_000734987.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe102     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 501379..512614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG56_RS02470 (MPG56_02470) - 501794..503728 (+) 1935 WP_245044442.1 type IA DNA topoisomerase -
  MPG56_RS07705 - 503728..503856 (+) 129 WP_001185489.1 hypothetical protein -
  MPG56_RS02475 (MPG56_02475) - 503858..504841 (+) 984 WP_245044142.1 virB8 family protein -
  MPG56_RS02480 (MPG56_02480) - 504841..506382 (+) 1542 WP_245044144.1 TrbG/VirB9 family P-type conjugative transfer protein -
  MPG56_RS02485 (MPG56_02485) comB10 506379..507614 (+) 1236 WP_000734987.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG56_RS02490 (MPG56_02490) - 507684..507977 (+) 294 WP_000671327.1 hypothetical protein -
  MPG56_RS02495 (MPG56_02495) - 507970..508233 (+) 264 WP_029650283.1 hypothetical protein -
  MPG56_RS02500 (MPG56_02500) - 508230..508529 (+) 300 WP_000660136.1 hypothetical protein -
  MPG56_RS02505 (MPG56_02505) - 508529..509470 (+) 942 WP_154497724.1 ATPase, T2SS/T4P/T4SS family -
  MPG56_RS02510 (MPG56_02510) - 509467..509922 (+) 456 WP_025276161.1 hypothetical protein -
  MPG56_RS02515 (MPG56_02515) - 509919..510209 (+) 291 WP_000159818.1 hypothetical protein -
  MPG56_RS02520 (MPG56_02520) - 510210..510767 (+) 558 WP_245044146.1 hypothetical protein -
  MPG56_RS02525 (MPG56_02525) - 510768..512495 (+) 1728 WP_245044148.1 type IV secretory system conjugative DNA transfer family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46414.46 Da        Isoelectric Point: 10.0008

>NTDB_id=574148 MPG56_RS02485 WP_000734987.1 506379..507614(+) (comB10) [Helicobacter pylori strain Hpfe102]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=574148 MPG56_RS02485 WP_000734987.1 506379..507614(+) (comB10) [Helicobacter pylori strain Hpfe102]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAA
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCACTAGTGCAAAAATTACCAAATTTGCCTAAAGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATCTAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGTGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAAGGGGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAGAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAGG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

54.483

70.56

0.384