Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG56_RS01525 Genome accession   NZ_CP094076
Coordinates   294353..295402 (-) Length   349 a.a.
NCBI ID   WP_245043979.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe102     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 289353..300402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG56_RS01505 (MPG56_01505) rpsL 289901..290308 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG56_RS01510 (MPG56_01510) rpsG 290324..290791 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG56_RS01515 (MPG56_01515) fusA 290803..292881 (+) 2079 WP_000101840.1 elongation factor G -
  MPG56_RS01520 (MPG56_01520) - 293885..294154 (+) 270 WP_237017062.1 flagellar protein -
  MPG56_RS01525 (MPG56_01525) waaF 294353..295402 (-) 1050 WP_245043979.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG56_RS01530 (MPG56_01530) hisS 295464..296792 (+) 1329 WP_000632524.1 histidine--tRNA ligase -
  MPG56_RS01535 (MPG56_01535) asd 296779..297819 (+) 1041 WP_245043981.1 aspartate-semialdehyde dehydrogenase -
  MPG56_RS01540 (MPG56_01540) - 298250..299443 (+) 1194 WP_245043983.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39545.38 Da        Isoelectric Point: 9.8197

>NTDB_id=574144 MPG56_RS01525 WP_245043979.1 294353..295402(-) (waaF) [Helicobacter pylori strain Hpfe102]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDNTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKDYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSATLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAKTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=574144 MPG56_RS01525 WP_245043979.1 294353..295402(-) (waaF) [Helicobacter pylori strain Hpfe102]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCGCAAATGACTTGCGAGCTTTTTA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACAACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTAAGCCATGCGATAATGGCTGCCCCTAAAGACT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTACTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATCCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCAAAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGTCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

36.628

98.567

0.361