Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A7A20_RS05420 Genome accession   NZ_CP076259
Coordinates   1144961..1145590 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain WY517-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1139961..1150590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A20_RS05400 (A7A20_05355) ycbZ 1140351..1142111 (-) 1761 WP_000156526.1 Lon protease family protein -
  A7A20_RS05405 (A7A20_05360) matP 1142297..1142749 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  A7A20_RS05410 (A7A20_05365) ompA 1142824..1143876 (-) 1053 WP_000750419.1 porin OmpA -
  A7A20_RS05415 (A7A20_05370) sulA 1144233..1144742 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A7A20_RS05420 (A7A20_05375) sxy/tfoX 1144961..1145590 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A7A20_RS05425 (A7A20_05380) yccS 1145553..1147715 (-) 2163 WP_000875044.1 YccS family putative transporter -
  A7A20_RS05430 (A7A20_05385) yccF 1147725..1148171 (-) 447 WP_001261235.1 YccF domain-containing protein -
  A7A20_RS05435 (A7A20_05390) helD 1148294..1150348 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=574144 A7A20_RS05420 WP_000839153.1 1144961..1145590(+) (sxy/tfoX) [Escherichia coli strain WY517-2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=574144 A7A20_RS05420 WP_000839153.1 1144961..1145590(+) (sxy/tfoX) [Escherichia coli strain WY517-2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1