Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG31_RS05335 Genome accession   NZ_CP094074
Coordinates   1111489..1111773 (+) Length   94 a.a.
NCBI ID   WP_245015021.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe103     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1106489..1116773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG31_RS05310 (MPG31_05310) - 1107586..1108872 (+) 1287 WP_245015018.1 MFS transporter -
  MPG31_RS05315 (MPG31_05315) - 1108921..1109730 (+) 810 WP_001179215.1 flagellar hook-basal body protein -
  MPG31_RS05320 (MPG31_05320) - 1109705..1109990 (-) 286 Protein_1037 hypothetical protein -
  MPG31_RS05325 (MPG31_05325) - 1110121..1110909 (+) 789 WP_245015019.1 integrase -
  MPG31_RS05330 (MPG31_05330) - 1111013..1111492 (+) 480 WP_245015020.1 hypothetical protein -
  MPG31_RS05335 (MPG31_05335) comB2 1111489..1111773 (+) 285 WP_245015021.1 TrbC/VirB2 family protein Machinery gene
  MPG31_RS05340 (MPG31_05340) comB3 1111785..1112048 (+) 264 WP_245015022.1 competence protein ComB Machinery gene
  MPG31_RS05345 (MPG31_05345) - 1112059..1112295 (+) 237 WP_053574506.1 hypothetical protein -
  MPG31_RS05350 (MPG31_05350) comB4 1112295..1114877 (+) 2583 WP_245015023.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG31_RS05355 (MPG31_05355) - 1114874..1115008 (+) 135 WP_000738749.1 hypothetical protein -
  MPG31_RS05360 (MPG31_05360) - 1115001..1116170 (+) 1170 WP_245015024.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10709.08 Da        Isoelectric Point: 10.9123

>NTDB_id=574117 MPG31_RS05335 WP_245015021.1 1111489..1111773(+) (comB2) [Helicobacter pylori strain Hpfe103]
MKKLIHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=574117 MPG31_RS05335 WP_245015021.1 1111489..1111773(+) (comB2) [Helicobacter pylori strain Hpfe103]
ATGAAAAAATTAATTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553