Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   KHF85_RS20615 Genome accession   NZ_CP076255
Coordinates   1748709..1748819 (+) Length   36 a.a.
NCBI ID   WP_284569502.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. graminis strain NCPPB 3711     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1743709..1753819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHF85_RS07560 (KHF85_07540) - 1744128..1745165 (+) 1038 WP_284569100.1 2-hydroxyacid dehydrogenase -
  KHF85_RS07565 (KHF85_07545) - 1745266..1746291 (+) 1026 WP_284569101.1 aspartate-semialdehyde dehydrogenase -
  KHF85_RS20610 - 1747193..1747654 (+) 462 Protein_1489 FimV family protein -
  KHF85_RS20615 fimV 1748709..1748819 (+) 111 WP_284569502.1 FimV/HubP family polar landmark protein Machinery gene
  KHF85_RS07580 (KHF85_07555) truA 1749128..1749901 (+) 774 WP_284569102.1 tRNA pseudouridine(38-40) synthase TruA -
  KHF85_RS07585 (KHF85_07560) - 1749898..1750560 (+) 663 WP_003475513.1 phosphoribosylanthranilate isomerase -
  KHF85_RS07590 (KHF85_07565) - 1750737..1751084 (+) 348 WP_284569103.1 toxic anion resistance protein -
  KHF85_RS07595 (KHF85_07570) - 1751206..1751445 (+) 240 WP_284569104.1 helix-turn-helix domain-containing protein -
  KHF85_RS07600 (KHF85_07575) - 1751545..1753374 (+) 1830 WP_284569105.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 36 a.a.        Molecular weight: 3765.21 Da        Isoelectric Point: 4.0738

>NTDB_id=574107 KHF85_RS20615 WP_284569502.1 1748709..1748819(+) (fimV) [Xanthomonas translucens pv. graminis strain NCPPB 3711]
MDLGDNETARTLLVEVAAAGDPAARAEAQQLLARLN

Nucleotide


Download         Length: 111 bp        

>NTDB_id=574107 KHF85_RS20615 WP_284569502.1 1748709..1748819(+) (fimV) [Xanthomonas translucens pv. graminis strain NCPPB 3711]
ATGGACCTGGGCGACAACGAAACCGCGCGCACCCTGCTGGTCGAAGTGGCGGCCGCCGGCGATCCGGCGGCGCGTGCCGA
AGCCCAGCAGTTGCTGGCCCGCTTGAACTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

51.429

97.222

0.5