Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MPG62_RS01220 Genome accession   NZ_CP094071
Coordinates   236464..237009 (+) Length   181 a.a.
NCBI ID   WP_245099530.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe106     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 231464..242009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG62_RS01195 (MPG62_01195) - 231512..232126 (+) 615 WP_245099523.1 SH3 domain-containing protein -
  MPG62_RS01200 (MPG62_01200) - 232134..232925 (+) 792 WP_245099525.1 shikimate dehydrogenase -
  MPG62_RS01205 (MPG62_01205) - 232925..234859 (+) 1935 WP_245099527.1 ribonuclease R family protein -
  MPG62_RS01210 (MPG62_01210) holA 234849..235871 (+) 1023 WP_245099529.1 DNA polymerase III subunit delta -
  MPG62_RS01215 (MPG62_01215) rpsF 236014..236454 (+) 441 WP_001216703.1 30S ribosomal protein S6 -
  MPG62_RS01220 (MPG62_01220) ssb 236464..237009 (+) 546 WP_245099530.1 single-stranded DNA-binding protein Machinery gene
  MPG62_RS01225 (MPG62_01225) rpsR 237033..237290 (+) 258 WP_000440196.1 30S ribosomal protein S18 -
  MPG62_RS01230 (MPG62_01230) - 237568..239622 (+) 2055 WP_245099532.1 SabA family sialic acid-binding adhesin -
  MPG62_RS01235 (MPG62_01235) - 240212..240442 (-) 231 WP_000468330.1 YdcH family protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20200.48 Da        Isoelectric Point: 6.2434

>NTDB_id=574023 MPG62_RS01220 WP_245099530.1 236464..237009(+) (ssb) [Helicobacter pylori strain Hpfe106]
MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT
YESWMDQTGKKNSRHTITADSLQFIDKKSDNPQANAMQDSMTHEGFNNAYPANHNAPSQDPFNQAPSYAQNAYAKENLQA
QPSKYQNSVPEINIDEEEIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=574023 MPG62_RS01220 WP_245099530.1 236464..237009(+) (ssb) [Helicobacter pylori strain Hpfe106]
ATGTTTAATAAAGTGATTATGGTAGGGCGTTTGACCAGGAATGTGGAGTTGAAATATTTGCCTAGCGGTTCGGCTGCGGC
TACAATAGGTTTAGCCACAAGCAGGCGTTTTAAAAAGCAAGACGGCACGCTAGGCGAAGAGGTGTGCTTCATAGATGCTC
GTTTGTTTGGGCGAACGGCTGAAATCGCTAACCAGTATTTGAGCAAGGGTTCAAGCGTTTTGATAGAAGGGCGTTTGACT
TATGAGAGTTGGATGGATCAAACAGGCAAAAAAAATTCCCGCCACACTATCACAGCGGACTCGTTGCAATTTATAGATAA
AAAGTCAGACAATCCCCAAGCAAACGCCATGCAAGATAGCATGACGCATGAGGGTTTCAACAACGCTTATCCCGCTAATC
ATAACGCTCCTAGCCAGGATCCTTTTAACCAAGCCCCAAGTTATGCGCAAAACGCTTACGCTAAAGAGAATTTACAAGCA
CAGCCGTCCAAGTATCAAAACAGCGTGCCTGAAATCAATATTGATGAAGAAGAAATCCCCTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

35.106

100

0.365