Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG33_RS07150 Genome accession   NZ_CP094070
Coordinates   1489394..1490707 (-) Length   437 a.a.
NCBI ID   WP_245048900.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe107     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1484394..1495707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG33_RS07120 (MPG33_07120) nadC 1484857..1485678 (-) 822 WP_245048893.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG33_RS07125 (MPG33_07125) nadA 1485678..1486688 (-) 1011 WP_245048896.1 quinolinate synthase NadA -
  MPG33_RS07130 (MPG33_07130) - 1486678..1487481 (-) 804 WP_212879442.1 phosphatidylserine decarboxylase -
  MPG33_RS07135 (MPG33_07135) - 1487478..1487981 (-) 504 WP_000953083.1 hypothetical protein -
  MPG33_RS07140 (MPG33_07140) - 1487994..1488488 (-) 495 WP_014726917.1 hypothetical protein -
  MPG33_RS07145 (MPG33_07145) mqnP 1488481..1489365 (-) 885 WP_245062641.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG33_RS07150 (MPG33_07150) comEC/comE3 1489394..1490707 (-) 1314 WP_245048900.1 ComEC/Rec2 family competence protein Machinery gene
  MPG33_RS07155 (MPG33_07155) - 1490704..1492170 (-) 1467 WP_245048902.1 replicative DNA helicase -
  MPG33_RS07160 (MPG33_07160) - 1492180..1493574 (-) 1395 WP_245048904.1 NAD(P)H-hydrate dehydratase -
  MPG33_RS07165 (MPG33_07165) crdS 1493577..1494779 (-) 1203 WP_245049907.1 copper-sensing histidine kinase CrdS -
  MPG33_RS07170 (MPG33_07170) crdR 1494745..1495386 (-) 642 WP_075711046.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50039.92 Da        Isoelectric Point: 9.8572

>NTDB_id=574009 MPG33_RS07150 WP_245048900.1 1489394..1490707(-) (comEC/comE3) [Helicobacter pylori strain Hpfe107]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKSCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQIISLS
ALVFLNMLIVVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDSILNMPLTIPTISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=574009 MPG33_RS07150 WP_245048900.1 1489394..1490707(-) (comEC/comE3) [Helicobacter pylori strain Hpfe107]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCACTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAATCTTGCTC
GTTTTTGGAGTCCTTAAGATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCATTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGATCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTTATCGTTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATTCCA
TTTTAAACATGCCTTTAACGATCCCTACAATTTCGGTTTCTTCGCCTTTATGGCTTTTAGGGGCACATTTATTTTTAACG
ATTTTGAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(159-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95