Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   MPG33_RS06840 Genome accession   NZ_CP094070
Coordinates   1423584..1424819 (+) Length   411 a.a.
NCBI ID   WP_245048851.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe107     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1418584..1429819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG33_RS06825 (MPG33_06825) - 1418995..1420929 (+) 1935 WP_245049899.1 type IA DNA topoisomerase -
  MPG33_RS07835 - 1420929..1421057 (+) 129 WP_001185489.1 hypothetical protein -
  MPG33_RS06830 (MPG33_06830) - 1421059..1422046 (+) 988 Protein_1335 VirB8/TrbF family protein -
  MPG33_RS06835 (MPG33_06835) - 1422046..1423587 (+) 1542 WP_245048849.1 TrbG/VirB9 family P-type conjugative transfer protein -
  MPG33_RS06840 (MPG33_06840) comB10 1423584..1424819 (+) 1236 WP_245048851.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG33_RS06845 (MPG33_06845) - 1424889..1425186 (+) 298 Protein_1338 hypothetical protein -
  MPG33_RS06850 (MPG33_06850) - 1425179..1425442 (+) 264 WP_245048853.1 hypothetical protein -
  MPG33_RS06855 (MPG33_06855) - 1425439..1425738 (+) 300 WP_180509385.1 hypothetical protein -
  MPG33_RS06860 (MPG33_06860) - 1425738..1426680 (+) 943 Protein_1341 ATPase, T2SS/T4P/T4SS family -
  MPG33_RS06865 (MPG33_06865) - 1426677..1427132 (+) 456 WP_245048854.1 mobilization protein -
  MPG33_RS06870 (MPG33_06870) - 1427129..1427419 (+) 291 WP_120872358.1 hypothetical protein -
  MPG33_RS06875 (MPG33_06875) - 1427420..1427977 (+) 558 WP_245048855.1 hypothetical protein -
  MPG33_RS06880 (MPG33_06880) - 1427978..1429705 (+) 1728 WP_245062600.1 type IV secretory system conjugative DNA transfer family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46430.41 Da        Isoelectric Point: 9.9548

>NTDB_id=574008 MPG33_RS06840 WP_245048851.1 1423584..1424819(+) (comB10) [Helicobacter pylori strain Hpfe107]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTRSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGSDVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMQEQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=574008 MPG33_RS06840 WP_245048851.1 1423584..1424819(+) (comB10) [Helicobacter pylori strain Hpfe107]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAACTTCTATAAAAAATAGTGTTTCTAATACAAGATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAAGGATCTGATGTCAAAGGCTATAATGGCATGATAGGCACACTCCATAACAAAT
ACTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGCTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCAAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

53.793

70.56

0.38