Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG33_RS01505 Genome accession   NZ_CP094070
Coordinates   295860..296909 (-) Length   349 a.a.
NCBI ID   WP_245062941.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe107     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 290860..301909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG33_RS01485 (MPG33_01485) rpsL 291474..291881 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG33_RS01490 (MPG33_01490) rpsG 291897..292364 (+) 468 WP_001254366.1 30S ribosomal protein S7 -
  MPG33_RS01495 (MPG33_01495) fusA 292376..294454 (+) 2079 WP_000101843.1 elongation factor G -
  MPG33_RS07870 - 294877..295089 (-) 213 Protein_291 hypothetical protein -
  MPG33_RS01500 (MPG33_01500) - 295346..295669 (+) 324 WP_245063258.1 flagellar protein -
  MPG33_RS01505 (MPG33_01505) waaF 295860..296909 (-) 1050 WP_245062941.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG33_RS01510 (MPG33_01510) hisS 296971..298299 (+) 1329 WP_245062943.1 histidine--tRNA ligase -
  MPG33_RS01515 (MPG33_01515) asd 298286..299326 (+) 1041 WP_245062945.1 aspartate-semialdehyde dehydrogenase -
  MPG33_RS01520 (MPG33_01520) - 299737..300843 (+) 1107 WP_245062946.1 DUF874 family protein -
  MPG33_RS01525 (MPG33_01525) - 300936..301862 (-) 927 WP_245048802.1 radical SAM protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39483.31 Da        Isoelectric Point: 9.5570

>NTDB_id=573983 MPG33_RS01505 WP_245062941.1 295860..296909(-) (waaF) [Helicobacter pylori strain Hpfe107]
MSANAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAYFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIISAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIECIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=573983 MPG33_RS01505 WP_245062941.1 295860..296909(-) (waaF) [Helicobacter pylori strain Hpfe107]
ATGAGTGCAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGTATTTTATCTTAGTGGGCCCGCAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAGTCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTCTTTCGTTCTTTGTTCCTAAGCCATGCGATAATTTCTGCCCCCAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGTTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAGGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTCTAAAACTCATTAAAGGCTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGTGCATCGCTATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGTCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAAAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364