Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JKN69_RS18360 Genome accession   NZ_CP076243
Coordinates   3529793..3530422 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   A0AAV3HCB2
Organism   Escherichia coli O157:H7 strain Balcarce_14.2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3519156..3541595 3529793..3530422 within 0


Gene organization within MGE regions


Location: 3519156..3541595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKN69_RS18305 (JKN69_18150) yccA 3520142..3520801 (+) 660 WP_000375128.1 FtsH protease modulator YccA -
  JKN69_RS18310 (JKN69_18155) tusE 3520892..3521221 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  JKN69_RS18315 (JKN69_18160) yccX 3521218..3521496 (-) 279 WP_000048252.1 acylphosphatase -
  JKN69_RS18320 (JKN69_18165) rlmI 3521591..3522781 (+) 1191 WP_000116288.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  JKN69_RS18325 (JKN69_18170) hspQ 3522839..3523156 (+) 318 WP_001295356.1 heat shock protein HspQ -
  JKN69_RS18330 (JKN69_18175) yccU 3523201..3523614 (-) 414 WP_000665217.1 CoA-binding protein -
  JKN69_RS18335 (JKN69_18180) csgI 3523787..3524449 (+) 663 WP_000847791.1 DUF2057 family protein -
  JKN69_RS18340 (JKN69_18185) mgsA 3524545..3525003 (+) 459 WP_000424181.1 methylglyoxal synthase -
  JKN69_RS18345 (JKN69_18190) helD 3525035..3527089 (-) 2055 WP_001301436.1 DNA helicase IV -
  JKN69_RS18350 (JKN69_18195) yccF 3527212..3527658 (+) 447 WP_001261230.1 YccF domain-containing protein -
  JKN69_RS18355 (JKN69_18200) yccS 3527668..3529830 (+) 2163 WP_000875023.1 YccS family putative transporter -
  JKN69_RS18360 (JKN69_18205) sxy/tfoX 3529793..3530422 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JKN69_RS18365 (JKN69_18210) sulA 3530641..3531150 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JKN69_RS18370 (JKN69_18215) ompA 3531507..3532547 (+) 1041 WP_000750416.1 porin OmpA -
  JKN69_RS18375 (JKN69_18220) matP 3532622..3533074 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JKN69_RS18380 (JKN69_18225) ycbZ 3533260..3535020 (+) 1761 WP_000156526.1 AAA family ATPase -
  JKN69_RS18385 (JKN69_18230) fabA 3535089..3535607 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  JKN69_RS18390 (JKN69_18235) rmf 3535677..3535844 (-) 168 WP_000828648.1 ribosome modulation factor -
  JKN69_RS18395 (JKN69_18240) pqiC 3536100..3536663 (-) 564 WP_000759107.1 membrane integrity-associated transporter subunit PqiC -
  JKN69_RS18400 (JKN69_18245) pqiB 3536660..3538300 (-) 1641 WP_000445550.1 intermembrane transport protein PqiB -
  JKN69_RS18405 (JKN69_18250) pqiA 3538305..3539558 (-) 1254 WP_000333170.1 membrane integrity-associated transporter subunit PqiA -
  JKN69_RS18410 (JKN69_18255) uup 3539688..3541595 (-) 1908 WP_000053083.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=573957 JKN69_RS18360 WP_000839159.1 3529793..3530422(-) (sxy/tfoX) [Escherichia coli O157:H7 strain Balcarce_14.2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=573957 JKN69_RS18360 WP_000839159.1 3529793..3530422(-) (sxy/tfoX) [Escherichia coli O157:H7 strain Balcarce_14.2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995