Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG46_RS05750 Genome accession   NZ_CP094066
Coordinates   1187040..1188965 (+) Length   641 a.a.
NCBI ID   WP_245014126.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1182040..1193965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG46_RS05725 (MPG46_05725) hofB 1182239..1183678 (-) 1440 WP_245014122.1 outer membrane beta-barrel protein HofB -
  MPG46_RS05730 (MPG46_05730) pyrB 1183973..1184896 (-) 924 WP_245014123.1 aspartate carbamoyltransferase -
  MPG46_RS05735 (MPG46_05735) - 1184963..1185478 (+) 516 WP_000523553.1 hypothetical protein -
  MPG46_RS05740 (MPG46_05740) - 1185478..1186185 (+) 708 WP_245014124.1 TlyA family RNA methyltransferase -
  MPG46_RS05745 (MPG46_05745) - 1186151..1186993 (+) 843 WP_245014125.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG46_RS05750 (MPG46_05750) recP/tkt 1187040..1188965 (+) 1926 WP_245014126.1 transketolase Machinery gene
  MPG46_RS05755 (MPG46_05755) - 1188962..1191298 (+) 2337 WP_245014127.1 PD-(D/E)XK nuclease family protein -
  MPG46_RS05760 (MPG46_05760) - 1191295..1193823 (+) 2529 WP_245014128.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70416.64 Da        Isoelectric Point: 6.5044

>NTDB_id=573917 MPG46_RS05750 WP_245014126.1 1187040..1188965(+) (recP/tkt) [Helicobacter pylori strain Hpfe110]
MQLSNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISLKNKMHFEEVKVRGVSLEALWEKSLSPKIKE
KIHALKDFDFSAINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQAALSLSAPSGLILSRQNLPVLDEVSKEQVLKGAYVKYNAKNPTITLVASGSEVSLALEGAKMLERENIPT
QVVSAPCFDLLIEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=573917 MPG46_RS05750 WP_245014126.1 1187040..1188965(+) (recP/tkt) [Helicobacter pylori strain Hpfe110]
ATGCAATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTGCGCTTTTTGTGTGCGGATATGATAGA
TAAGGCTAATAGTGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACTAACCCTAAATGGCTCAACAGAGACAGGCTGGTTTTTAGCGGAGGGCATGCGAGTGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCTTGGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGTATTGAAATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCTGGGCACCTCAACCTAAACAATCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGTGCTATTAATATTAGTTTTAGCGAACAGGTCAAGATGCGGTTTTTAGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCTACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCACCCCTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAACGCTCAAATCAATCCTGATGAAAGCTTTATTATTAGCCTAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGTGTTAGTTTAGAAGCTTTATGGGAAAAATCCTTAAGCCCCAAAATAAAAGAA
AAGATCCATGCGTTAAAGGATTTTGATTTTAGTGCCATTAATTACCCCGTTTTCAAAAAAGGCGAATCTCTAGCCACAAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGGAGCGCGGATTTAGCCCCGT
CTAACAACACGCAGTTGAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCAGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGTGCTTTAATGAAACTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCGACGCACCAACCCATAGAACAATTGAGCCATTTACGCGCTTTGCCCAATTTCTATGCTTTCAGACCCAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAGCAGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAACAGGTTTTAAAAGGTGCGTATGTCAAATATAATGCTAAAAACCCCACTA
TCACGCTGGTTGCGAGCGGGAGCGAAGTTTCTTTGGCTTTAGAGGGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTAAGCGCGCCTTGCTTTGATTTGTTGATAGAGCAAGATGAAAGCTATCTTAAAGAACTCTTTAAAGGTAAAGT
CTTAGTCATTGAAGCGAGCCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGTT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-320)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.167

100

0.418