Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG46_RS01540 Genome accession   NZ_CP094066
Coordinates   299790..300839 (-) Length   349 a.a.
NCBI ID   WP_245014524.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe110     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 294790..305839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG46_RS01520 (MPG46_01520) rpsL 295659..296066 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG46_RS01525 (MPG46_01525) rpsG 296082..296549 (+) 468 WP_060758838.1 30S ribosomal protein S7 -
  MPG46_RS01530 (MPG46_01530) fusA 296561..298639 (+) 2079 WP_245014523.1 elongation factor G -
  MPG46_RS01535 (MPG46_01535) - 299157..299591 (+) 435 WP_000744159.1 hypothetical protein -
  MPG46_RS01540 (MPG46_01540) waaF 299790..300839 (-) 1050 WP_245014524.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG46_RS01545 (MPG46_01545) hisS 300901..302229 (+) 1329 WP_245014525.1 histidine--tRNA ligase -
  MPG46_RS01550 (MPG46_01550) asd 302216..303256 (+) 1041 WP_245014526.1 aspartate-semialdehyde dehydrogenase -
  MPG46_RS01555 (MPG46_01555) - 303687..304954 (+) 1268 Protein_300 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39481.29 Da        Isoelectric Point: 9.5934

>NTDB_id=573897 MPG46_RS01540 WP_245014524.1 299790..300839(-) (waaF) [Helicobacter pylori strain Hpfe110]
MSVNVPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNAPKKIGFNPSASYGSAKRWPASHYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETSPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=573897 MPG46_RS01540 WP_245014524.1 299790..300839(-) (waaF) [Helicobacter pylori strain Hpfe110]
ATGAGCGTAAATGTGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAACTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTAAGCCATGCGGTAATGGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACGCCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTCATTACGCTGAAGTTTCTGCTGCTTTGTTGGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGTTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCCATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCCCTTTTTGGCCCCACTGATGAAAAAGAAA
CTAGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAGGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.5

98.567

0.37