Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPF94_RS05435 Genome accession   NZ_CP094065
Coordinates   1132913..1134838 (+) Length   641 a.a.
NCBI ID   WP_245021857.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1127913..1139838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF94_RS05410 (MPF94_05410) hofB 1128114..1129553 (-) 1440 WP_245021854.1 outer membrane beta-barrel protein HofB -
  MPF94_RS05415 (MPF94_05415) pyrB 1129846..1130769 (-) 924 WP_017280171.1 aspartate carbamoyltransferase -
  MPF94_RS05420 (MPF94_05420) - 1130836..1131351 (+) 516 WP_015428757.1 hypothetical protein -
  MPF94_RS05425 (MPF94_05425) - 1131351..1132058 (+) 708 WP_245021855.1 TlyA family RNA methyltransferase -
  MPF94_RS05430 (MPF94_05430) - 1132024..1132866 (+) 843 WP_245021856.1 bifunctional riboflavin kinase/FAD synthetase -
  MPF94_RS05435 (MPF94_05435) recP/tkt 1132913..1134838 (+) 1926 WP_245021857.1 transketolase Machinery gene
  MPF94_RS05440 (MPF94_05440) - 1134835..1137171 (+) 2337 WP_245021858.1 PD-(D/E)XK nuclease family protein -
  MPF94_RS05445 (MPF94_05445) - 1137168..1139726 (+) 2559 WP_245021859.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70521.78 Da        Isoelectric Point: 6.6104

>NTDB_id=573872 MPF94_RS05435 WP_245021857.1 1132913..1134838(+) (recP/tkt) [Helicobacter pylori strain Hpfe112]
MRLSNADLERLKSMANTLRFLCADMIDRANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESTSLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGISLEALWEKSLSPKTKE
KIHALKNFDFSAINYPIFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQIALSLSAPSGLILSRQNLPVLDEVSKEQVLKGAYVKYDAKNPVITLVASGSEVSLALEGAKMLERENIPT
QVVSAPCFDLLVEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITAQAKRLLH
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=573872 MPF94_RS05435 WP_245021857.1 1132913..1134838(+) (recP/tkt) [Helicobacter pylori strain Hpfe112]
ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTGCGCTTTTTGTGCGCAGATATGATAGA
TAGGGCTAATAGTGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACTAACCCTAAATGGCTCAATAGAGATAGGCTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCCTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGCATTGAGATCACGACCGGACCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCACTTCTTTAGCCGGGCACCTCAACCTAAACAATCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTTAGCGAACAGGTCAAGATGCGTTTTTTAGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCACCCCTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAACGCTCAAATCAACCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCATTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAACAAAAGAA
AAGATCCATGCGTTAAAGAATTTTGATTTTAGCGCCATCAATTATCCCATTTTCAAAAAAGGCGAATCTTTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGGAGCGCGGATTTAGCCCCGT
CTAACAACACGCAATTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGTGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCCAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATTTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGAGCCACACACCAGCCTATAGAGCAATTGAGCCATTTGCGCGCTTTGCCCAATTTCTATGCTTTCAGACCCAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAATAGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCTGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGTGCGTATGTTAAATATGATGCTAAAAATCCCGTTA
TCACGCTGGTTGCGAGCGGGAGCGAAGTTTCCTTGGCTTTAGAGGGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGTGCGCCATGCTTTGATTTATTGGTGGAACAAGATGAAAGCTATCTTAAAGAGCTTTTTAAAGGTAAAGT
TTTAGTCATTGAAGCGAGCCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCGCTCAAGCTAAAAGGTTACTCCAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.014

100

0.417