Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG37_RS01545 Genome accession   NZ_CP094064
Coordinates   300827..301876 (-) Length   349 a.a.
NCBI ID   WP_245051338.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe114     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 295827..306876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG37_RS01525 (MPG37_01525) rpsL 296684..297091 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG37_RS01530 (MPG37_01530) rpsG 297107..297574 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  MPG37_RS01535 (MPG37_01535) fusA 297586..299664 (+) 2079 WP_220824790.1 elongation factor G -
  MPG37_RS01540 (MPG37_01540) - 300205..300639 (+) 435 WP_000744159.1 hypothetical protein -
  MPG37_RS01545 (MPG37_01545) waaF 300827..301876 (-) 1050 WP_245051338.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG37_RS01550 (MPG37_01550) hisS 301938..303266 (+) 1329 WP_245051340.1 histidine--tRNA ligase -
  MPG37_RS01555 (MPG37_01555) asd 303253..304293 (+) 1041 WP_245051342.1 aspartate-semialdehyde dehydrogenase -
  MPG37_RS01560 (MPG37_01560) - 304725..305912 (+) 1188 WP_245051343.1 DUF874 family protein -
  MPG37_RS01565 (MPG37_01565) - 306043..306786 (-) 744 WP_001871592.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39651.51 Da        Isoelectric Point: 9.8264

>NTDB_id=573820 MPG37_RS01545 WP_245051338.1 300827..301876(-) (waaF) [Helicobacter pylori strain Hpfe114]
MSVNASKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDTIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=573820 MPG37_RS01545 WP_245051338.1 300827..301876(-) (waaF) [Helicobacter pylori strain Hpfe114]
ATGAGCGTAAATGCGTCCAAACGCATGCGTATTTTATTGCGTTTGCCTAACTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACACTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGTATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCCCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGTCCCTATAAAGCTCAAAAAGCAATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364