Detailed information NTG0573802

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPG68_RS07030
• Genome accession: NZ_CP094063
• Coordinates: 1451128..1452330 (-)
• Length: 400 a.a.
• NCBI ID: WP_245026524.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe115
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1446128..1457330

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG68_RS07005 (MPG68_07005)	-	1446232..1446750 (-)	519	WP_120891200.1	replication regulatory RepB family protein	-
MPG68_RS07010 (MPG68_07010)	-	1446747..1447691 (-)	945	WP_134889897.1	CpaF/VirB11 family protein	-
MPG68_RS07015 (MPG68_07015)	-	1447696..1447968 (-)	273	WP_173400944.1	hypothetical protein	-
MPG68_RS07020 (MPG68_07020)	-	1447986..1448963 (-)	978	WP_180408187.1	hypothetical protein	-
MPG68_RS07025 (MPG68_07025)	-	1448976..1451144 (-)	2169	WP_245026522.1	collagen-like protein	-
MPG68_RS07030 (MPG68_07030)	comB10	1451128..1452330 (-)	1203	WP_245026524.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG68_RS07035 (MPG68_07035)	-	1452327..1453994 (-)	1668	WP_245026526.1	TrbG/VirB9 family P-type conjugative transfer protein	-
MPG68_RS07040 (MPG68_07040)	-	1453991..1455106 (-)	1116	WP_245026528.1	VirB8/TrbF family protein	-
MPG68_RS07045 (MPG68_07045)	-	1455099..1455233 (-)	135	WP_096397351.1	type IV secretion system protein VirB7	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44693.42 Da
• Isoelectric Point: 10.0240

>NTDB_id=573802 MPG68_RS07030 WP_245026524.1 1451128..1452330(-) (comB10) [Helicobacter pylori strain Hpfe115]
MNKSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPAAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQRVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPAIKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNDNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGVTSALANQQNKKGNGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFITPSLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=573802 MPG68_RS07030 WP_245026524.1 1451128..1452330(-) (comB10) [Helicobacter pylori strain Hpfe115]
ATGAATAAGTCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGATTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTGCAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACGAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCATTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTATTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACGATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAACGG
ATTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAGTTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTAATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTACCCCTAGTTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.261	99.5	0.52