Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG68_RS05355 Genome accession   NZ_CP094063
Coordinates   1106762..1108687 (+) Length   641 a.a.
NCBI ID   WP_245026183.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe115     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1101762..1113687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG68_RS05330 (MPG68_05330) hofB 1101958..1103397 (-) 1440 WP_220831355.1 outer membrane beta-barrel protein HofB -
  MPG68_RS05335 (MPG68_05335) pyrB 1103694..1104617 (-) 924 WP_245026179.1 aspartate carbamoyltransferase -
  MPG68_RS05340 (MPG68_05340) - 1104685..1105200 (+) 516 WP_245026180.1 hypothetical protein -
  MPG68_RS05345 (MPG68_05345) - 1105200..1105907 (+) 708 WP_245026181.1 TlyA family RNA methyltransferase -
  MPG68_RS05350 (MPG68_05350) - 1105873..1106715 (+) 843 WP_245026182.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG68_RS05355 (MPG68_05355) recP/tkt 1106762..1108687 (+) 1926 WP_245026183.1 transketolase Machinery gene
  MPG68_RS05360 (MPG68_05360) - 1108684..1111020 (+) 2337 WP_245026184.1 PD-(D/E)XK nuclease family protein -
  MPG68_RS05365 (MPG68_05365) - 1111017..1113557 (+) 2541 WP_245026185.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70483.69 Da        Isoelectric Point: 6.6406

>NTDB_id=573791 MPG68_RS05355 WP_245026183.1 1106762..1108687(+) (recP/tkt) [Helicobacter pylori strain Hpfe115]
MRLSNADLERLKSMANTLRFLCADMIDRANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE
KIHALKNFDFSTINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQVALSLSAPSGLILSRQNLPVLDEVSKEQVLKGAYVKHNSKDPVITLVASGSEVSLALEGAKMLERENIPT
QVVSAPCFDLLIEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLH
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=573791 MPG68_RS05355 WP_245026183.1 1106762..1108687(+) (recP/tkt) [Helicobacter pylori strain Hpfe115]
ATGCGATTGAGTAATGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTGCGCTTTTTGTGCGCGGACATGATAGA
TAGGGCTAATAGTGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTTAATAGAGACAGGCTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCTTGGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGTATTGAAATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACCTAAACAACCTCATTGTGATCTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTTAGCGAACAGGTCAAGATGCGGTTTTTGGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCGCCTTTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAACGCTCAAATCAATCCTGATGAAAGCTTTATCATTAGTCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAGGCCTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAAGAATTTTGATTTTAGCACTATCAATTACCCCGTTTTCAAAAAAGGCGAATCTTTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGTGAGGGCTTTTTGGGGGGGAGTGCGGATTTAGCCCCGT
CTAATAACACGCAGTTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGTGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCGACGCACCAGCCTATAGAACAATTGAGCCATTTACGCGCTTTGCCCAATTTCTACGCTTTCAGACCCAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAGTGGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGCGCGTATGTTAAACACAACTCTAAAGATCCCGTTA
TCACGCTGGTTGCGAGCGGGAGTGAAGTCTCTTTGGCTTTAGAGGGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGCGCGCCATGCTTTGATTTATTGATAGAGCAAGATGAAAGCTATCTTAAAGAGCTTTTTAAGGGTAAAGT
TTTAGTCATTGAAGCGAGCCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCCAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.86

100

0.415