Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG68_RS01510 Genome accession   NZ_CP094063
Coordinates   290597..291646 (-) Length   349 a.a.
NCBI ID   WP_245026960.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe115     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 285597..296646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG68_RS01490 (MPG68_01490) rpsL 286456..286863 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG68_RS01495 (MPG68_01495) rpsG 286879..287346 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  MPG68_RS01500 (MPG68_01500) fusA 287358..289436 (+) 2079 WP_245026958.1 elongation factor G -
  MPG68_RS01505 (MPG68_01505) - 290189..290407 (+) 219 WP_000744170.1 hypothetical protein -
  MPG68_RS01510 (MPG68_01510) waaF 290597..291646 (-) 1050 WP_245026960.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG68_RS01515 (MPG68_01515) hisS 291708..293036 (+) 1329 WP_245026962.1 histidine--tRNA ligase -
  MPG68_RS01520 (MPG68_01520) asd 293023..294063 (+) 1041 WP_245026965.1 aspartate-semialdehyde dehydrogenase -
  MPG68_RS01525 (MPG68_01525) - 294494..295645 (+) 1152 WP_245026967.1 DUF874 family protein -
  MPG68_RS01530 (MPG68_01530) - 295792..296535 (-) 744 WP_245026969.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39553.43 Da        Isoelectric Point: 9.8197

>NTDB_id=573776 MPG68_RS01510 WP_245026960.1 290597..291646(-) (waaF) [Helicobacter pylori strain Hpfe115]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIISAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLLN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAAGTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=573776 MPG68_RS01510 WP_245026960.1 290597..291646(-) (waaF) [Helicobacter pylori strain Hpfe115]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAACTGGTTAGGCGATGGGGTAATGGCAAGCTC
GCTCTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGTCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTACTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATTTCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATCTTAAAACTCATCAAAGGTTTATTGAAAAACCCTTTATTACTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTGGCACGCAAACCCCCTTAATCGCCCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364