Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB4   Type   Machinery gene
Locus tag   MPG58_RS06555 Genome accession   NZ_CP094061
Coordinates   1376018..1376521 (+) Length   167 a.a.
NCBI ID   WP_245011669.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe120     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1371018..1381521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG58_RS06520 (MPG58_06520) - 1371712..1372005 (+) 294 WP_245011665.1 hypothetical protein -
  MPG58_RS07810 - 1372012..1373536 (+) 1525 Protein_1278 hypothetical protein -
  MPG58_RS06535 (MPG58_06535) - 1373533..1373835 (+) 303 WP_342369156.1 virB2 type IV secretion protein -
  MPG58_RS06540 (MPG58_06540) comB3 1373836..1374087 (+) 252 WP_245011668.1 virB3 type IV secretion protein Machinery gene
  MPG58_RS07720 - 1374170..1374850 (+) 681 WP_280635530.1 hypothetical protein -
  MPG58_RS07725 - 1374810..1376021 (+) 1212 WP_280635531.1 DUF87 domain-containing protein -
  MPG58_RS06555 (MPG58_06555) comB4 1376018..1376521 (+) 504 WP_245011669.1 TraM recognition domain-containing protein Machinery gene
  MPG58_RS06560 (MPG58_06560) - 1376524..1378155 (+) 1632 WP_245011670.1 type IA DNA topoisomerase -
  MPG58_RS06565 (MPG58_06565) - 1378118..1378306 (-) 189 Protein_1285 DUF1104 domain-containing protein -
  MPG58_RS06570 (MPG58_06570) - 1378660..1379520 (-) 861 WP_245011671.1 outer membrane protein -
  MPG58_RS06575 (MPG58_06575) rplT 1379720..1380070 (-) 351 WP_001264172.1 50S ribosomal protein L20 -
  MPG58_RS06580 (MPG58_06580) rpmI 1380165..1380359 (-) 195 WP_001125541.1 50S ribosomal protein L35 -
  MPG58_RS06585 (MPG58_06585) infC 1380340..1380951 (-) 612 WP_000089218.1 translation initiation factor IF-3 -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18877.82 Da        Isoelectric Point: 9.4858

>NTDB_id=573716 MPG58_RS06555 WP_245011669.1 1376018..1376521(+) (comB4) [Helicobacter pylori strain Hpfe120]
MNRAKLENKPFYIFIDEAKSVIENPIMLAKIKDTLAQARKLNGVLTLAFQDINQLDGVEGAKSIIENAAQVILYPTNNFE
KLESYGILLSPIEKSFLSKTPLNARQVLVKNLLTQSSVFLEINLEKLNSTSKNFLRAYSSSASSVFELETLKKDNPKNYK
EIYLTKE

Nucleotide


Download         Length: 504 bp        

>NTDB_id=573716 MPG58_RS06555 WP_245011669.1 1376018..1376521(+) (comB4) [Helicobacter pylori strain Hpfe120]
ATGAATAGAGCTAAATTAGAAAACAAGCCTTTTTATATCTTCATTGATGAAGCAAAATCTGTTATTGAAAATCCCATCAT
GTTAGCTAAAATCAAAGACACACTCGCTCAAGCTAGAAAACTCAATGGGGTTTTAACTTTAGCCTTTCAAGACATTAACC
AACTTGATGGTGTAGAGGGAGCAAAGTCCATTATAGAAAACGCCGCTCAGGTCATACTCTATCCTACAAACAATTTTGAG
AAATTAGAGAGCTATGGCATTTTATTAAGTCCTATTGAAAAATCATTTTTAAGCAAAACGCCGTTAAACGCTAGGCAAGT
ATTAGTGAAAAACCTTCTCACTCAATCTAGCGTATTTTTAGAAATCAATTTAGAAAAGCTAAACAGCACCAGTAAAAATT
TTTTAAGAGCGTATAGCTCTAGTGCGTCTAGCGTTTTTGAACTGGAAACGCTTAAAAAGGATAATCCAAAGAATTATAAA
GAAATTTACTTGACAAAGGAGTAG

Domains

Predicted by InterProScan.

TraM recognition site of TraD and TraG (TraG-D_C)

(10-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB4 Helicobacter pylori 26695

44.079

91.018

0.401