Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG58_RS06540 Genome accession   NZ_CP094061
Coordinates   1373836..1374087 (+) Length   83 a.a.
NCBI ID   WP_245011668.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe120     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1368836..1379087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG58_RS07805 - 1369395..1369582 (+) 188 Protein_1272 hypothetical protein -
  MPG58_RS06500 (MPG58_06500) - 1369872..1370084 (-) 213 WP_245012244.1 DUF1104 domain-containing protein -
  MPG58_RS06505 (MPG58_06505) - 1370119..1370509 (+) 391 Protein_1274 P-type conjugative transfer protein TrbL -
  MPG58_RS06510 (MPG58_06510) - 1370582..1370854 (+) 273 Protein_1275 CAAX protease -
  MPG58_RS06515 (MPG58_06515) - 1370913..1371692 (+) 780 Protein_1276 hypothetical protein -
  MPG58_RS06520 (MPG58_06520) - 1371712..1372005 (+) 294 WP_245011665.1 hypothetical protein -
  MPG58_RS07810 - 1372012..1373536 (+) 1525 Protein_1278 hypothetical protein -
  MPG58_RS06535 (MPG58_06535) - 1373533..1373835 (+) 303 WP_342369156.1 virB2 type IV secretion protein -
  MPG58_RS06540 (MPG58_06540) comB3 1373836..1374087 (+) 252 WP_245011668.1 virB3 type IV secretion protein Machinery gene
  MPG58_RS07720 - 1374170..1374850 (+) 681 WP_280635530.1 hypothetical protein -
  MPG58_RS07725 - 1374810..1376021 (+) 1212 WP_280635531.1 DUF87 domain-containing protein -
  MPG58_RS06555 (MPG58_06555) comB4 1376018..1376521 (+) 504 WP_245011669.1 TraM recognition domain-containing protein Machinery gene
  MPG58_RS06560 (MPG58_06560) - 1376524..1378155 (+) 1632 WP_245011670.1 type IA DNA topoisomerase -
  MPG58_RS06565 (MPG58_06565) - 1378118..1378306 (-) 189 Protein_1285 DUF1104 domain-containing protein -

Sequence

Protein


Download         Length: 83 a.a.        Molecular weight: 9734.43 Da        Isoelectric Point: 6.1957

>NTDB_id=573715 MPG58_RS06540 WP_245011668.1 1373836..1374087(+) (comB3) [Helicobacter pylori strain Hpfe120]
MALHIICVESINIREISKRETFLGLNLDSWVVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDERYNSHFACAFHIK
DRS

Nucleotide


Download         Length: 252 bp        

>NTDB_id=573715 MPG58_RS06540 WP_245011668.1 1373836..1374087(+) (comB3) [Helicobacter pylori strain Hpfe120]
ATGGCATTGCATATTATTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGGTTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAG
GACAGGAGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

38.462

93.976

0.361