Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG58_RS05080 Genome accession   NZ_CP094061
Coordinates   1082788..1083963 (+) Length   391 a.a.
NCBI ID   WP_245011503.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe120     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1077788..1088963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG58_RS05055 (MPG58_05055) - 1078116..1079012 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG58_RS05060 (MPG58_05060) - 1079238..1080104 (+) 867 WP_245012234.1 5'-3' exonuclease -
  MPG58_RS05065 (MPG58_05065) - 1080126..1081376 (-) 1251 WP_245011502.1 outer membrane family protein -
  MPG58_RS05070 (MPG58_05070) - 1081544..1082410 (+) 867 WP_140613946.1 DnaJ C-terminal domain-containing protein -
  MPG58_RS05075 (MPG58_05075) - 1082420..1082791 (+) 372 WP_039704360.1 helix-turn-helix transcriptional regulator -
  MPG58_RS05080 (MPG58_05080) rarA 1082788..1083963 (+) 1176 WP_245011503.1 replication-associated recombination protein A Machinery gene
  MPG58_RS05085 (MPG58_05085) fur 1084122..1084574 (+) 453 WP_000824992.1 ferric iron uptake transcriptional regulator -
  MPG58_RS05090 (MPG58_05090) - 1084594..1085091 (-) 498 WP_000780291.1 DUF2147 domain-containing protein -
  MPG58_RS05095 (MPG58_05095) - 1085088..1085624 (-) 537 WP_245011504.1 YhcH/YjgK/YiaL family protein -
  MPG58_RS05100 (MPG58_05100) fliY 1085652..1086515 (-) 864 WP_245011505.1 flagellar motor switch protein FliY -
  MPG58_RS05105 (MPG58_05105) fliM 1086519..1087583 (-) 1065 WP_000763603.1 flagellar motor switch protein FliM -
  MPG58_RS05110 (MPG58_05110) - 1087576..1088352 (-) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPG58_RS05115 (MPG58_05115) - 1088330..1088644 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43817.46 Da        Isoelectric Point: 8.0467

>NTDB_id=573704 MPG58_RS05080 WP_245011503.1 1082788..1083963(+) (rarA) [Helicobacter pylori strain Hpfe120]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGVSTQDPNYSLSHAIRSRSFIFELTPLNKSDLGKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=573704 MPG58_RS05080 WP_245011503.1 1082788..1083963(+) (rarA) [Helicobacter pylori strain Hpfe120]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGGAAAGACGCTCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACGAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGTTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGGCAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCCATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCTATCTACTATCTAGCGCGCTTGATTGCTGGTGGGGAAAACCCAGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGTATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAACCAGGCTTTGGATTGTATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTACTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.893

100

0.389