Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG58_RS01505 Genome accession   NZ_CP094061
Coordinates   296615..297664 (-) Length   349 a.a.
NCBI ID   WP_245011951.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe120     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 291615..302664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG58_RS01490 (MPG58_01490) rpsL 292801..293208 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG58_RS01495 (MPG58_01495) rpsG 293224..293691 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG58_RS01500 (MPG58_01500) fusA 293703..295781 (+) 2079 WP_180458238.1 elongation factor G -
  MPG58_RS01505 (MPG58_01505) waaF 296615..297664 (-) 1050 WP_245011951.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG58_RS01510 (MPG58_01510) hisS 297726..299054 (+) 1329 WP_245011952.1 histidine--tRNA ligase -
  MPG58_RS01515 (MPG58_01515) asd 299041..300081 (+) 1041 WP_245011953.1 aspartate-semialdehyde dehydrogenase -
  MPG58_RS01520 (MPG58_01520) - 300517..301662 (+) 1146 WP_245011954.1 DUF874 family protein -
  MPG58_RS01525 (MPG58_01525) - 301899..302642 (-) 744 WP_128030948.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39529.37 Da        Isoelectric Point: 9.8820

>NTDB_id=573689 MPG58_RS01505 WP_245011951.1 296615..297664(-) (waaF) [Helicobacter pylori strain Hpfe120]
MSVNAPKRMRILLRLPNWLGDGVMASPLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIISAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLSFN
NAYNLCGKTSIEELVERIATLDLFITNDSGPMHVAASAKTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=573689 MPG58_RS01505 WP_245011951.1 296615..297664(-) (waaF) [Helicobacter pylori strain Hpfe120]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCCC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCTTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTAAGCCATGCGATAATTTCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
TGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATCATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGGTAGAGCGCATCGCTACTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCAAAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.416

97.708

0.375