Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG39_RS05290 Genome accession   NZ_CP094059
Coordinates   1105035..1106960 (+) Length   641 a.a.
NCBI ID   WP_245079986.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1100035..1111960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG39_RS05265 (MPG39_05265) pyrB 1101746..1102669 (-) 924 WP_245079981.1 aspartate carbamoyltransferase -
  MPG39_RS05270 (MPG39_05270) - 1102729..1102890 (-) 162 Protein_1026 aspartate carbamoyltransferase -
  MPG39_RS05275 (MPG39_05275) - 1102957..1103472 (+) 516 WP_000523557.1 hypothetical protein -
  MPG39_RS05280 (MPG39_05280) - 1103473..1104180 (+) 708 WP_245079983.1 TlyA family RNA methyltransferase -
  MPG39_RS05285 (MPG39_05285) - 1104146..1104988 (+) 843 WP_245079984.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG39_RS05290 (MPG39_05290) recP/tkt 1105035..1106960 (+) 1926 WP_245079986.1 transketolase Machinery gene
  MPG39_RS05295 (MPG39_05295) - 1106957..1109293 (+) 2337 WP_245079987.1 PD-(D/E)XK nuclease family protein -
  MPG39_RS05300 (MPG39_05300) - 1109290..1111845 (+) 2556 WP_245079989.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70471.63 Da        Isoelectric Point: 6.4367

>NTDB_id=573665 MPG39_RS05290 WP_245079986.1 1105035..1106960(+) (recP/tkt) [Helicobacter pylori strain Hpfe122]
MQLSNADLERLKSMANTLRFLCADMIDRANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGTINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE
KIHALKGFDFSAINYPIFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQIALSLSAPSGLILSRQNLPVLDEVSKEQVLKGAYVKHHSKDPIITLVASGSEVSLALESAKMLERENIPT
QVVSAPCFDLLIEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEEFGFSVENITTQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=573665 MPG39_RS05290 WP_245079986.1 1105035..1106960(+) (recP/tkt) [Helicobacter pylori strain Hpfe122]
ATGCAATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTTCGCTTTTTGTGCGCGGACATGATAGA
TAGGGCTAATAGCGGGCATCCGGGCGTGTGTTTGGGACTAGCTGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTCAATAGGGACAGGCTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCTTGGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGCATTGAGATCACGACAGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGCCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACCTAAACAATCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCACTATTAATATTAGTTTCAGCGAACAGGTCAAGATGCGGTTTTTGGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCTACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGAGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCGCCTTTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAACGCTCAAATCAATCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAAGGGTTTTGATTTTAGCGCCATCAATTACCCCATTTTCAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGGAGCGCGGATTTAGCCCCGT
CTAATAACACGCAATTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGACTACTT
GATGCCCAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG
AAGATGGGGCGACGCATCAACCCATAGAGCAATTGAGCCATTTACGCGCTTTGCCCAATTTCTACGCTTTCAGACCCAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAATAGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGTGCGTATGTTAAACACCACTCTAAAGATCCCATTA
TCACGCTAGTTGCAAGCGGGAGCGAAGTCTCTTTGGCTTTAGAGAGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGTGCGCCATGCTTTGATTTATTGATAGAGCAAGATGAAAGCTATCTTAAAGAACTCTTTAAAGGTAAAGT
TTTAGTGATTGAAGCGAGTCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGTT
CAGCAAAGGGCGATAAACTCTTTGAAGAATTCGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(524-577)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-320)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.707

100

0.413