Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG08_RS05525 Genome accession   NZ_CP094058
Coordinates   1161907..1163832 (+) Length   641 a.a.
NCBI ID   WP_245041883.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe123     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1156907..1168832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG08_RS05500 (MPG08_05500) hofB 1157123..1158561 (-) 1439 Protein_1068 outer membrane beta-barrel protein HofB -
  MPG08_RS05505 (MPG08_05505) pyrB 1158840..1159763 (-) 924 WP_223887766.1 aspartate carbamoyltransferase -
  MPG08_RS05510 (MPG08_05510) - 1159830..1160345 (+) 516 WP_000523561.1 hypothetical protein -
  MPG08_RS05515 (MPG08_05515) - 1160345..1161052 (+) 708 WP_245041881.1 TlyA family RNA methyltransferase -
  MPG08_RS05520 (MPG08_05520) - 1161018..1161860 (+) 843 WP_245041882.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG08_RS05525 (MPG08_05525) recP/tkt 1161907..1163832 (+) 1926 WP_245041883.1 transketolase Machinery gene
  MPG08_RS05530 (MPG08_05530) - 1163829..1166165 (+) 2337 WP_245041884.1 PD-(D/E)XK nuclease family protein -
  MPG08_RS05535 (MPG08_05535) - 1166162..1168717 (+) 2556 WP_245041885.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70467.69 Da        Isoelectric Point: 6.6104

>NTDB_id=573628 MPG08_RS05525 WP_245041883.1 1161907..1163832(+) (recP/tkt) [Helicobacter pylori strain Hpfe123]
MQFSNADLERLKSMANTLRFLCADMIDRANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENARINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE
KIHALKGFDFSAINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQAALSLNAPSGLILSRQNLPVLDEVSKEQVLKGAYVKYDAKNPVITLVASGSEVSLALEGAKMLERENIPT
QVVSVPCFDLLIEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLH
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=573628 MPG08_RS05525 WP_245041883.1 1161907..1163832(+) (recP/tkt) [Helicobacter pylori strain Hpfe123]
ATGCAATTTAGTAACGCTGACTTGGAACGATTAAAAAGCATGGCCAACACGCTGCGCTTTTTGTGCGCGGACATGATAGA
TAGGGCCAATAGCGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACTAACCCCAAATGGCTCAATAGGGACAGGTTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCCTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGCATTGAGATTACAACAGGCCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACCTAAACAACCTCATTGTAATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTTAGCGAACAAGTCAAGATGCGGTTTTTAGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCACCCCTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAACGCTCGAATCAATCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAAGGGTTTTGATTTTAGCGCCATCAATTACCCCGTTTTCAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAAGGCTTTTTGGGGGGAAGCGCGGATTTAGCCCCGT
CTAATAACACGCAGTTAAAACACTCGGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTGGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCCAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCGACGCACCAGCCTATAGAACAATTGAGCCATTTACGCGCTTTGCCCAACTTCTACGCTTTCAGACCCAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAGCAGCGTTAAGTTTGAACGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTCTTAAAAGGCGCGTATGTTAAATATGATGCTAAAAATCCCGTTA
TCACGCTGGTTGCGAGCGGGAGCGAAGTTTCTTTGGCTTTAGAGGGTGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGTGTGCCATGCTTTGATTTATTGATAGAGCAAGATGAAAGCTATCTTAAAGAGCTTTTTAAGGGTAAAGT
TTTAGTCATTGAAGCGAGCCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGTT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCCAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(524-577)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.167

100

0.418