Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG08_RS01510 Genome accession   NZ_CP094058
Coordinates   295616..296665 (-) Length   349 a.a.
NCBI ID   WP_245042558.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe123     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 290616..301665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG08_RS01490 (MPG08_01490) rpsL 291589..291996 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG08_RS01495 (MPG08_01495) rpsG 292012..292479 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG08_RS01500 (MPG08_01500) fusA 292491..294569 (+) 2079 WP_000101843.1 elongation factor G -
  MPG08_RS01505 (MPG08_01505) - 295103..295429 (+) 327 WP_000744163.1 hypothetical protein -
  MPG08_RS01510 (MPG08_01510) waaF 295616..296665 (-) 1050 WP_245042558.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG08_RS01515 (MPG08_01515) hisS 296727..298055 (+) 1329 WP_245042560.1 histidine--tRNA ligase -
  MPG08_RS01520 (MPG08_01520) asd 298042..299082 (+) 1041 WP_245042562.1 aspartate-semialdehyde dehydrogenase -
  MPG08_RS01525 (MPG08_01525) - 299514..300695 (+) 1182 WP_245042564.1 DUF874 family protein -
  MPG08_RS01530 (MPG08_01530) - 300921..301664 (-) 744 WP_180757532.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39590.61 Da        Isoelectric Point: 9.9389

>NTDB_id=573612 MPG08_RS01510 WP_245042558.1 295616..296665(-) (waaF) [Helicobacter pylori strain Hpfe123]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDMAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVMAAPKKYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEISAALLEEGHEIYFFGAKEDIIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=573612 MPG08_RS01510 WP_245042558.1 295616..296665(-) (waaF) [Helicobacter pylori strain Hpfe123]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGTCCGCAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGTGATATGGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTCTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATGGCTGCCCCAAAAAAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAATTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATATTATCGTTTCTGAAGAAATTTTAAAACTCATTAAAGGCTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTATAATCTGTGCGGGAAGACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAAAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361