Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG66_RS01530 Genome accession   NZ_CP094056
Coordinates   298124..299173 (-) Length   349 a.a.
NCBI ID   WP_245025257.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe124     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 293124..304173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG66_RS01510 (MPG66_01510) rpsL 294214..294621 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG66_RS01515 (MPG66_01515) rpsG 294637..295104 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  MPG66_RS01520 (MPG66_01520) fusA 295116..297194 (+) 2079 WP_021305209.1 elongation factor G -
  MPG66_RS01525 (MPG66_01525) - 297719..297937 (+) 219 WP_000744170.1 hypothetical protein -
  MPG66_RS01530 (MPG66_01530) waaF 298124..299173 (-) 1050 WP_245025257.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG66_RS01535 (MPG66_01535) hisS 299235..300563 (+) 1329 WP_245025259.1 histidine--tRNA ligase -
  MPG66_RS01540 (MPG66_01540) asd 300550..301590 (+) 1041 WP_245025261.1 aspartate-semialdehyde dehydrogenase -
  MPG66_RS01545 (MPG66_01545) - 302022..303352 (+) 1331 Protein_300 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39461.26 Da        Isoelectric Point: 9.7445

>NTDB_id=573573 MPG66_RS01530 WP_245025257.1 298124..299173(-) (waaF) [Helicobacter pylori strain Hpfe124]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLSFN
NAYNLCGKTSIKELIERIAILDLFITNDSGPMHVAAGAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNENNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=573573 MPG66_RS01530 WP_245025257.1 298124..299173(-) (waaF) [Helicobacter pylori strain Hpfe124]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTACCTAACTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAGCTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCAATAATGGCTGCTCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATCTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATCATTCAAT
AACGCTTACAATCTGTGCGGGAAGACAAGCATTAAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTGGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAACAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.261

98.854

0.378