Detailed information NTG0573523

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPF87_RS07665
• Genome accession: NZ_CP094052
• Coordinates: 1586215..1587417 (+)
• Length: 400 a.a.
• NCBI ID: WP_140482552.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe126
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1581215..1592417

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF87_RS07650 (MPF87_07650)	-	1583254..1583388 (+)	135	WP_021301032.1	hypothetical protein	-
MPF87_RS07655 (MPF87_07655)	-	1583381..1584554 (+)	1174	Protein_1494	VirB8/TrbF family protein	-
MPF87_RS07660 (MPF87_07660)	-	1584551..1586218 (+)	1668	WP_180475079.1	TrbG/VirB9 family P-type conjugative transfer protein	-
MPF87_RS07665 (MPF87_07665)	comB10	1586215..1587417 (+)	1203	WP_140482552.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF87_RS07670 (MPF87_07670)	-	1587401..1589663 (+)	2263	Protein_1497	collagen-like protein	-
MPF87_RS07675 (MPF87_07675)	-	1589676..1590653 (+)	978	WP_245012639.1	hypothetical protein	-
MPF87_RS07680 (MPF87_07680)	-	1590671..1590943 (+)	273	WP_245012640.1	hypothetical protein	-
MPF87_RS07685 (MPF87_07685)	-	1590948..1591892 (+)	945	WP_245012641.1	CpaF/VirB11 family protein	-
MPF87_RS07690 (MPF87_07690)	-	1591889..1592407 (+)	519	WP_245012642.1	replication regulatory RepB family protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44666.31 Da
• Isoelectric Point: 9.9651

>NTDB_id=573523 MPF87_RS07665 WP_140482552.1 1586215..1587417(+) (comB10) [Helicobacter pylori strain Hpfe126]
MNKSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPAAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDVFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=573523 MPF87_RS07665 WP_140482552.1 1586215..1587417(+) (comB10) [Helicobacter pylori strain Hpfe126]
ATGAATAAGTCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGATTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTGCAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGTGATGTTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACAATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAACGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGGCAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGTCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.015	99.5	0.527