Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPF87_RS07630 Genome accession   NZ_CP094052
Coordinates   1579869..1580153 (+) Length   94 a.a.
NCBI ID   WP_000736106.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe126     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1574869..1585153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF87_RS07610 (MPF87_07610) - 1577163..1577939 (+) 777 WP_245012634.1 CAAX protease -
  MPF87_RS07615 (MPF87_07615) - 1577927..1578445 (+) 519 Protein_1486 restriction endonuclease subunit S -
  MPF87_RS07620 (MPF87_07620) - 1578501..1579289 (+) 789 WP_245012635.1 integrase -
  MPF87_RS07625 (MPF87_07625) - 1579393..1579872 (+) 480 WP_245012636.1 hypothetical protein -
  MPF87_RS07630 (MPF87_07630) comB2 1579869..1580153 (+) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  MPF87_RS07635 (MPF87_07635) comB3 1580165..1580428 (+) 264 WP_208371262.1 competence protein ComB Machinery gene
  MPF87_RS07640 (MPF87_07640) - 1580440..1580676 (+) 237 WP_245012637.1 hypothetical protein -
  MPF87_RS07645 (MPF87_07645) comB4 1580676..1583252 (+) 2577 WP_245012638.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF87_RS07650 (MPF87_07650) - 1583254..1583388 (+) 135 WP_021301032.1 hypothetical protein -
  MPF87_RS07655 (MPF87_07655) - 1583381..1584554 (+) 1174 Protein_1494 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10752.11 Da        Isoelectric Point: 11.1589

>NTDB_id=573520 MPF87_RS07630 WP_000736106.1 1579869..1580153(+) (comB2) [Helicobacter pylori strain Hpfe126]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=573520 MPF87_RS07630 WP_000736106.1 1579869..1580153(+) (comB2) [Helicobacter pylori strain Hpfe126]
ATGAAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553