Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPF87_RS01590 Genome accession   NZ_CP094052
Coordinates   313310..314359 (-) Length   349 a.a.
NCBI ID   WP_245012803.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe126     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 308310..319359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF87_RS01570 (MPF87_01570) rpsL 309166..309573 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPF87_RS01575 (MPF87_01575) rpsG 309589..310056 (+) 468 WP_245012801.1 30S ribosomal protein S7 -
  MPF87_RS01580 (MPF87_01580) fusA 310068..312146 (+) 2079 WP_245012802.1 elongation factor G -
  MPF87_RS01585 (MPF87_01585) - 312890..313108 (+) 219 WP_000744170.1 hypothetical protein -
  MPF87_RS01590 (MPF87_01590) waaF 313310..314359 (-) 1050 WP_245012803.1 lipopolysaccharide heptosyltransferase II Regulator
  MPF87_RS01595 (MPF87_01595) hisS 314421..315749 (+) 1329 WP_245012804.1 histidine--tRNA ligase -
  MPF87_RS01600 (MPF87_01600) asd 315736..316776 (+) 1041 WP_245012805.1 aspartate-semialdehyde dehydrogenase -
  MPF87_RS01605 (MPF87_01605) - 317210..318466 (+) 1257 WP_245012806.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39556.46 Da        Isoelectric Point: 9.5732

>NTDB_id=573489 MPF87_RS01590 WP_245012803.1 313310..314359(-) (waaF) [Helicobacter pylori strain Hpfe126]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNACFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIEHIAILDLFITNDSGPMHVAASTQIPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=573489 MPF87_RS01590 WP_245012803.1 313310..314359(-) (waaF) [Helicobacter pylori strain Hpfe126]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCATGTTTTATCTTAGTGGGCCCGCAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATGGCCGCCCCAAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCACATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAATCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCTTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.427

97.994

0.367