Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG10_RS01585 Genome accession   NZ_CP094051
Coordinates   301184..302233 (-) Length   349 a.a.
NCBI ID   WP_245061388.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe127     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 296184..307233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG10_RS01565 (MPG10_01565) rpsL 297322..297729 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG10_RS01570 (MPG10_01570) rpsG 297745..298212 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG10_RS01575 (MPG10_01575) fusA 298224..300302 (+) 2079 WP_000101843.1 elongation factor G -
  MPG10_RS01580 (MPG10_01580) - 300828..300992 (+) 165 WP_000744175.1 hypothetical protein -
  MPG10_RS01585 (MPG10_01585) waaF 301184..302233 (-) 1050 WP_245061388.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG10_RS01590 (MPG10_01590) hisS 302295..303623 (+) 1329 WP_245061389.1 histidine--tRNA ligase -
  MPG10_RS01595 (MPG10_01595) asd 303610..304650 (+) 1041 WP_245061890.1 aspartate-semialdehyde dehydrogenase -
  MPG10_RS01600 (MPG10_01600) - 305080..306387 (+) 1308 WP_245061390.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39526.36 Da        Isoelectric Point: 9.7383

>NTDB_id=573448 MPG10_RS01585 WP_245061388.1 301184..302233(-) (waaF) [Helicobacter pylori strain Hpfe127]
MSVNAPERMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIISAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKVGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNKKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=573448 MPG10_RS01585 WP_245061388.1 301184..302233(-) (waaF) [Helicobacter pylori strain Hpfe127]
ATGAGCGTAAATGCGCCCGAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTCTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACTAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTCTTTCGTTCTTTGTTTCTCAGCCATGCGATAATTTCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTAGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAGTCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCCATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAAAAACGAGTTTGCCCT
TTAAAGAATAAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.647

97.421

0.367