Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   MO986_RS02050 Genome accession   NZ_CP093967
Coordinates   436603..436968 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain NY4605     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431603..441968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MO986_RS02020 (MO986_02020) pyrR 432225..432737 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  MO986_RS02025 (MO986_02025) ruvX 432849..433283 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  MO986_RS02030 (MO986_02030) - 433283..433852 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  MO986_RS02035 (MO986_02035) - 433901..434794 (-) 894 WP_023518289.1 energy transducer TonB -
  MO986_RS02040 (MO986_02040) gshB 434941..435894 (-) 954 WP_023518290.1 glutathione synthase -
  MO986_RS02045 (MO986_02045) pilG 436149..436556 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  MO986_RS02050 (MO986_02050) pilH 436603..436968 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  MO986_RS02055 (MO986_02055) - 437019..437555 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  MO986_RS02060 (MO986_02060) pilJ 437640..439688 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  MO986_RS02065 (MO986_02065) pilK 439749..440624 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=573346 MO986_RS02050 WP_003084587.1 436603..436968(+) (pilH) [Pseudomonas aeruginosa strain NY4605]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=573346 MO986_RS02050 WP_003084587.1 436603..436968(+) (pilH) [Pseudomonas aeruginosa strain NY4605]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364