Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   MO979_RS00100 Genome accession   NZ_CP093965
Coordinates   21482..22507 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain ATCC BAA-2108     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 16482..27507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MO979_RS00075 (MO979_00075) - 16670..16987 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  MO979_RS00080 (MO979_00080) trkA 17136..18509 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  MO979_RS00085 (MO979_00085) rsmB 18537..19841 (-) 1305 WP_033876987.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  MO979_RS00090 (MO979_00090) fmt 19838..20782 (-) 945 WP_023131048.1 methionyl-tRNA formyltransferase -
  MO979_RS00095 (MO979_00095) def 20837..21343 (-) 507 WP_003107059.1 peptide deformylase -
  MO979_RS00100 (MO979_00100) tsaP 21482..22507 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MO979_RS00105 (MO979_00105) dprA 22642..23730 (+) 1089 WP_003118479.1 DNA-processing protein DprA Machinery gene
  MO979_RS00110 (MO979_00110) - 23771..24328 (+) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  MO979_RS00115 (MO979_00115) - 24338..25315 (-) 978 WP_023131047.1 NADPH:quinone reductase -
  MO979_RS00120 (MO979_00120) hemF 25506..26423 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  MO979_RS00125 (MO979_00125) aroE 26481..27305 (+) 825 WP_016264001.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=573137 MO979_RS00100 WP_003097294.1 21482..22507(+) (tsaP) [Pseudomonas aeruginosa strain ATCC BAA-2108]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=573137 MO979_RS00100 WP_003097294.1 21482..22507(+) (tsaP) [Pseudomonas aeruginosa strain ATCC BAA-2108]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTAGCCACCGAAGGCGACGTCGCGACCCTGGCACTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393