Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MO978_RS02635 Genome accession   NZ_CP093959
Coordinates   513675..514316 (-) Length   213 a.a.
NCBI ID   WP_289424710.1    Uniprot ID   -
Organism   Lactococcus lactis strain FAM 17919     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 508675..519316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MO978_RS02615 (MO978_02620) cysK 508706..509638 (-) 933 WP_003131750.1 cysteine synthase A -
  MO978_RS02620 (MO978_02625) - 509856..510941 (+) 1086 WP_010905433.1 LysM peptidoglycan-binding domain-containing protein -
  MO978_RS02625 (MO978_02630) - 510980..511612 (-) 633 WP_003131748.1 MBL fold metallo-hydrolase -
  MO978_RS02630 (MO978_02635) - 511613..513607 (-) 1995 WP_003131747.1 transglycosylase domain-containing protein -
  MO978_RS02635 (MO978_02640) recU 513675..514316 (-) 642 WP_289424710.1 Holliday junction resolvase RecU Machinery gene
  MO978_RS02640 (MO978_02645) - 514397..514921 (+) 525 WP_010905434.1 DUF1273 domain-containing protein -
  MO978_RS02645 (MO978_02650) spx 515081..515467 (+) 387 WP_010905435.1 transcriptional regulator Spx -
  MO978_RS02650 (MO978_02655) - 515559..515840 (+) 282 WP_003131743.1 UPF0223 family protein -
  MO978_RS02655 (MO978_02660) - 515806..516585 (+) 780 WP_017864167.1 inositol monophosphatase family protein -
  MO978_RS02660 (MO978_02665) murA 516679..517959 (+) 1281 WP_032398873.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MO978_RS02665 (MO978_02670) - 517959..518150 (+) 192 WP_003131739.1 DNA-directed RNA polymerase subunit beta -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24399.16 Da        Isoelectric Point: 10.1344

>NTDB_id=573068 MO978_RS02635 WP_289424710.1 513675..514316(-) (recU) [Lactococcus lactis strain FAM 17919]
MVNYPNGRSRAYSTVPKKKKSLTELSVTKKSTSKTKGMVAFGKRGMNFEAEINATNEYYLSRGLAVIHKKPTPIQIVKVD
YPQRSRAKITEAYFRQASTTDYSGVYKGHYIDFEAKETQQKTVFPLKNFHEHQIVHMSNVLAQGGITFVLLHFARLNETY
LLPSSCLITFYYEKGGLKSIPLSHIRENGYKIETNHIPRIPYLEIVNKLCEVQ

Nucleotide


Download         Length: 642 bp        

>NTDB_id=573068 MO978_RS02635 WP_289424710.1 513675..514316(-) (recU) [Lactococcus lactis strain FAM 17919]
ATGGTTAATTATCCTAATGGAAGGTCGCGAGCTTACAGCACTGTTCCTAAGAAAAAAAAATCACTGACAGAGCTGTCAGT
AACTAAAAAAAGCACCTCAAAAACCAAAGGGATGGTTGCCTTCGGGAAGCGGGGAATGAATTTTGAAGCTGAAATTAATG
CAACAAATGAGTATTATCTTTCTCGTGGACTTGCAGTTATTCACAAAAAGCCAACACCAATTCAAATCGTTAAAGTAGAT
TATCCACAAAGGAGTCGTGCAAAAATTACAGAAGCTTACTTCAGGCAAGCATCTACTACTGACTACTCTGGAGTCTATAA
AGGTCACTACATCGACTTTGAAGCAAAGGAAACACAGCAAAAAACTGTTTTCCCTCTAAAAAATTTCCATGAGCATCAAA
TTGTTCACATGAGTAATGTTCTCGCTCAAGGGGGAATTACTTTTGTCCTCTTGCACTTTGCAAGGTTAAATGAAACATAT
CTTCTTCCATCTTCGTGTTTGATTACTTTTTATTACGAAAAAGGCGGTTTAAAGTCAATTCCGCTTTCTCATATTCGCGA
AAATGGCTATAAAATTGAAACGAACCACATTCCTAGAATTCCTTATCTAGAAATTGTGAATAAACTTTGTGAGGTACAGT
AA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(44-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

47.393

99.061

0.469