Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | KM417_RS18860 | Genome accession | NZ_CP076173 |
| Coordinates | 3638692..3639471 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus anthracis strain A178 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3604370..3678294 | 3638692..3639471 | within | 0 |
Gene organization within MGE regions
Location: 3604370..3678294
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KM417_RS18710 (KM417_18725) | - | 3604714..3606384 (-) | 1671 | WP_000823085.1 | ribonuclease J | - |
| KM417_RS18715 (KM417_18730) | dapA | 3607150..3608028 (-) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| KM417_RS18720 (KM417_18735) | dapG | 3608040..3609272 (-) | 1233 | WP_000692470.1 | aspartate kinase | - |
| KM417_RS18725 (KM417_18740) | asd | 3609296..3610342 (-) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| KM417_RS18730 (KM417_18745) | dpaB | 3610493..3611092 (-) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| KM417_RS18735 (KM417_18750) | dpaA | 3611089..3611991 (-) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| KM417_RS18740 (KM417_18755) | - | 3612266..3612517 (-) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| KM417_RS18745 (KM417_18760) | - | 3612644..3613885 (-) | 1242 | WP_000592993.1 | M16 family metallopeptidase | - |
| KM417_RS18750 (KM417_18765) | - | 3613972..3614871 (-) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| KM417_RS18755 (KM417_18770) | pnp | 3615023..3617161 (-) | 2139 | WP_000076750.1 | polyribonucleotide nucleotidyltransferase | - |
| KM417_RS18760 (KM417_18775) | rpsO | 3617322..3617591 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| KM417_RS18765 (KM417_18780) | ribF | 3617692..3618663 (-) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| KM417_RS18770 (KM417_18785) | truB | 3618707..3619630 (-) | 924 | WP_000399357.1 | tRNA pseudouridine(55) synthase TruB | - |
| KM417_RS18775 (KM417_18790) | rbfA | 3619717..3620073 (-) | 357 | WP_000776446.1 | 30S ribosome-binding factor RbfA | - |
| KM417_RS18780 (KM417_18795) | - | 3620089..3620370 (-) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| KM417_RS18785 (KM417_18800) | infB | 3620367..3622427 (-) | 2061 | WP_000036339.1 | translation initiation factor IF-2 | - |
| KM417_RS18790 (KM417_18805) | - | 3622432..3622743 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| KM417_RS18795 (KM417_18810) | rnpM | 3622744..3623016 (-) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| KM417_RS18800 (KM417_18815) | nusA | 3623028..3624134 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| KM417_RS18805 (KM417_18820) | rimP | 3624152..3624622 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| KM417_RS18810 (KM417_18825) | - | 3624955..3629256 (-) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| KM417_RS18815 (KM417_18830) | - | 3629381..3631081 (-) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| KM417_RS18820 (KM417_18835) | rseP | 3631191..3632447 (-) | 1257 | WP_001090228.1 | RIP metalloprotease RseP | - |
| KM417_RS18825 (KM417_18840) | dxr | 3632464..3633606 (-) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| KM417_RS18830 (KM417_18845) | cdsA | 3633630..3634421 (-) | 792 | WP_000813581.1 | phosphatidate cytidylyltransferase | - |
| KM417_RS18835 (KM417_18850) | uppS | 3634439..3635215 (-) | 777 | WP_000971303.1 | isoprenyl transferase | - |
| KM417_RS18840 (KM417_18855) | frr | 3635301..3635858 (-) | 558 | WP_000531503.1 | ribosome recycling factor | - |
| KM417_RS18845 (KM417_18860) | pyrH | 3635861..3636583 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| KM417_RS18850 (KM417_18865) | tsf | 3636650..3637537 (-) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| KM417_RS18855 (KM417_18870) | rpsB | 3637641..3638342 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| KM417_RS18860 (KM417_18875) | codY | 3638692..3639471 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| KM417_RS18865 (KM417_18880) | hslU | 3639549..3640940 (-) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| KM417_RS18870 (KM417_18885) | hslV | 3640963..3641505 (-) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| KM417_RS18875 (KM417_18890) | xerC | 3641548..3642447 (-) | 900 | WP_001101226.1 | tyrosine recombinase XerC | - |
| KM417_RS18880 (KM417_18895) | trmFO | 3642513..3643817 (-) | 1305 | WP_003161605.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| KM417_RS18885 (KM417_18900) | topA | 3643868..3645946 (-) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| KM417_RS18890 (KM417_18905) | dprA | 3646091..3646839 (-) | 749 | Protein_3694 | DNA-processing protein DprA | - |
| KM417_RS18895 (KM417_18910) | sucD | 3647047..3647949 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| KM417_RS18900 (KM417_18915) | sucC | 3647970..3649130 (-) | 1161 | WP_001020786.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| KM417_RS18905 (KM417_18920) | rnhB | 3649324..3650097 (-) | 774 | WP_001174712.1 | ribonuclease HII | - |
| KM417_RS18910 (KM417_18925) | ylqF | 3650149..3651039 (-) | 891 | WP_000236707.1 | ribosome biogenesis GTPase YlqF | - |
| KM417_RS18915 (KM417_18930) | lepB | 3651060..3651611 (-) | 552 | WP_000711857.1 | signal peptidase I | - |
| KM417_RS18920 (KM417_18935) | rplS | 3651713..3652057 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| KM417_RS18925 (KM417_18940) | trmD | 3652204..3652938 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| KM417_RS18930 (KM417_18945) | rimM | 3652938..3653453 (-) | 516 | WP_000170269.1 | ribosome maturation factor RimM | - |
| KM417_RS18935 (KM417_18950) | - | 3653574..3653801 (-) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| KM417_RS18940 (KM417_18955) | rpsP | 3653816..3654088 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| KM417_RS18945 (KM417_18960) | ffh | 3654189..3655538 (-) | 1350 | WP_000863456.1 | signal recognition particle protein | - |
| KM417_RS18950 (KM417_18965) | - | 3655551..3655883 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| KM417_RS18955 (KM417_18970) | ftsY | 3656017..3657006 (-) | 990 | WP_000007650.1 | signal recognition particle-docking protein FtsY | - |
| KM417_RS18960 (KM417_18975) | smc | 3657022..3660591 (-) | 3570 | WP_000478985.1 | chromosome segregation protein SMC | - |
| KM417_RS18965 (KM417_18980) | rncS | 3660738..3661475 (-) | 738 | WP_001146873.1 | ribonuclease III | - |
| KM417_RS18970 (KM417_18985) | acpP | 3661534..3661767 (-) | 234 | WP_000786062.1 | acyl carrier protein | - |
| KM417_RS18975 (KM417_18990) | fabG | 3661837..3662577 (-) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| KM417_RS18980 (KM417_18995) | fabD | 3662577..3663521 (-) | 945 | WP_000516958.1 | ACP S-malonyltransferase | - |
| KM417_RS18985 (KM417_19000) | plsX | 3663536..3664528 (-) | 993 | WP_000684111.1 | phosphate acyltransferase PlsX | - |
| KM417_RS18990 (KM417_19005) | fapR | 3664525..3665118 (-) | 594 | WP_000747352.1 | transcription factor FapR | - |
| KM417_RS18995 (KM417_19010) | recG | 3665207..3667255 (-) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| KM417_RS19000 (KM417_19015) | - | 3667545..3669221 (-) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| KM417_RS19005 (KM417_19020) | - | 3669244..3669606 (-) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| KM417_RS19010 (KM417_19025) | rpmB | 3669985..3670173 (+) | 189 | WP_000124778.1 | 50S ribosomal protein L28 | - |
| KM417_RS19015 (KM417_19030) | spoVM | 3670246..3670326 (-) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| KM417_RS19020 (KM417_19035) | - | 3670393..3671073 (-) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| KM417_RS19025 (KM417_19040) | rpe | 3671173..3671817 (-) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| KM417_RS19030 (KM417_19045) | rsgA | 3671820..3672701 (-) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| KM417_RS19035 (KM417_19050) | prkC | 3672970..3674943 (-) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| KM417_RS19040 (KM417_19055) | - | 3674952..3675704 (-) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| KM417_RS19045 (KM417_19060) | rlmN | 3675709..3676797 (-) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| KM417_RS19050 (KM417_19065) | rsmB | 3676802..3678136 (-) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=572964 KM417_RS18860 WP_000421288.1 3638692..3639471(-) (codY) [Bacillus anthracis strain A178]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=572964 KM417_RS18860 WP_000421288.1 3638692..3639471(-) (codY) [Bacillus anthracis strain A178]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |