Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   CPY99_RS21340 Genome accession   NZ_AP017620
Coordinates   4230498..4231490 (+) Length   330 a.a.
NCBI ID   WP_000224500.1    Uniprot ID   -
Organism   Escherichia coli strain MRY15-131     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4225498..4236490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPY99_RS21315 (MRY15131_c39180) rbsD 4225622..4226041 (+) 420 WP_000715936.1 D-ribose pyranase -
  CPY99_RS21320 (MRY15131_c39190) rbsA 4226049..4227554 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  CPY99_RS21325 (MRY15131_c39200) rbsC 4227559..4228524 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  CPY99_RS21330 (MRY15131_c39210) rbsB 4228549..4229439 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  CPY99_RS21335 (MRY15131_c39220) rbsK 4229565..4230494 (+) 930 WP_001361791.1 ribokinase -
  CPY99_RS21340 (MRY15131_c39230) cytR 4230498..4231490 (+) 993 WP_000224500.1 ribose operon transcriptional repressor RbsR Regulator
  CPY99_RS21345 (MRY15131_c39240) mdtD 4231456..4232883 (-) 1428 WP_061092921.1 multidrug transporter subunit MdtD -
  CPY99_RS21350 (MRY15131_c39250) yieP 4232906..4233598 (-) 693 WP_001131177.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36626.88 Da        Isoelectric Point: 5.2141

>NTDB_id=57272 CPY99_RS21340 WP_000224500.1 4230498..4231490(+) (cytR) [Escherichia coli strain MRY15-131]
MATMKDVARQAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=57272 CPY99_RS21340 WP_000224500.1 4230498..4231490(+) (cytR) [Escherichia coli strain MRY15-131]
TTGGCTACAATGAAAGATGTTGCCCGCCAGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATCGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAACGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGTGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361

Multiple sequence alignment