Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MQG38_RS08900 Genome accession   NZ_CP093913
Coordinates   1804401..1806398 (-) Length   665 a.a.
NCBI ID   WP_258248026.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 9R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1799401..1811398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG38_RS08875 - 1799494..1800111 (-) 618 WP_005568493.1 MarC family protein -
  MQG38_RS08880 - 1800192..1802117 (+) 1926 WP_005589143.1 ABC transporter ATP-binding protein -
  MQG38_RS08885 recA 1802265..1803323 (+) 1059 WP_005544399.1 recombinase RecA Machinery gene
  MQG38_RS08890 recX 1803405..1803863 (+) 459 WP_005548507.1 recombination regulator RecX -
  MQG38_RS08895 - 1803940..1804329 (+) 390 WP_005568497.1 RidA family protein -
  MQG38_RS08900 recP/tkt 1804401..1806398 (-) 1998 WP_258248026.1 transketolase Machinery gene
  MQG38_RS08905 tal 1806531..1807484 (-) 954 WP_005544407.1 transaldolase -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 72784.41 Da        Isoelectric Point: 6.3130

>NTDB_id=572687 MQG38_RS08900 WP_258248026.1 1804401..1806398(-) (recP/tkt) [Aggregatibacter actinomycetemcomitans strain 9R]
MSNRQQLANAIRFLSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLHHNPTNPQWANRDRFVLSNGHGSMLIYSLLHLSGY
DLSIEDLKQFRQLHSKTPGHPEYGYTPGVETTTGPLGQGISNAVGMAIAEKTLAGQFNRDGHNIVDHYTYAFLGDGCLME
GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTQKRFEAYGWQVIPAIDGHNPAQIAEAIKQAQAETAKPTL
IICKTIIGFGSPNKSNSHDSHGAPLGDEEIALTRKALHWDYAPFEIPADIYAQWDTKAKGAEWEKAWDEKFAAYAKAYPE
LAAEFTRRIAKKLPADWAKDSQAFVEHLQTNPASIASRKASQNAIEAYAKILPELLGGSADLASSNLTLWSGSKPIRATQ
NVDGNYINYGVREFGMAGIMNGIALHGGFIPYGATFLMFMEYAHNAIRMAALMKQRSLFVFTHDSIGLGEDGPTHQPVEQ
TAALRLIPNLNTWRPCDQVESAIAWKAAIERTDGPSALIFTRQNLAQMDRTSEQLANVARGAYVLKDCAGTPELIFIATG
SEVELAVKAAEQLTAEGKKVRVVSMPSTNVFDKQDEAYRESVLPVAVTKRVAIEAGISDFWYKYVGFNGRIIGMHSFGES
APADQLFKLFGFTVGNVVAKAKEIL

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=572687 MQG38_RS08900 WP_258248026.1 1804401..1806398(-) (recP/tkt) [Aggregatibacter actinomycetemcomitans strain 9R]
ATGTCAAATCGTCAACAACTCGCCAATGCAATTCGTTTTTTAAGTATGGATGCGGTACAAAAAGCGAAATCCGGTCACCC
GGGCGCACCTATGGGCATGGCGGATATCGCCGAAGTATTATGGCGTGATTTTTTACACCACAACCCGACCAACCCGCAAT
GGGCTAACCGCGACCGTTTTGTGCTGTCCAACGGACACGGTTCCATGCTGATTTACAGCTTATTACACCTCAGCGGTTAC
GATTTATCCATCGAAGATTTAAAACAATTCCGTCAACTGCACTCCAAAACACCGGGCCATCCTGAATACGGCTACACCCC
CGGTGTCGAAACCACCACCGGCCCGTTAGGTCAAGGCATTAGTAATGCGGTGGGGATGGCAATTGCGGAAAAAACCCTTG
CCGGTCAATTTAACCGTGACGGTCATAACATCGTTGATCACTATACTTACGCCTTTTTAGGCGACGGTTGTTTAATGGAG
GGGATTTCCCACGAAGCCTGTTCTTTAGCGGGAACCTTAGGTTTGGGTAAATTAATCGCATTCTATGATGACAACAATAT
CTCTATCGACGGACACGTTGACGGCTGGTTCACCGACGACACACAAAAACGCTTTGAAGCGTACGGCTGGCAAGTGATTC
CGGCAATCGACGGTCACAATCCGGCACAAATTGCCGAAGCCATCAAACAAGCGCAAGCGGAAACCGCCAAACCAACATTA
ATTATCTGTAAAACCATTATCGGTTTCGGTTCACCAAATAAATCCAACTCTCATGACAGCCACGGCGCGCCGTTAGGCGA
CGAAGAAATCGCTTTAACCCGCAAAGCGTTACATTGGGATTATGCCCCGTTTGAAATTCCGGCGGACATTTATGCGCAAT
GGGATACCAAAGCAAAAGGCGCGGAATGGGAAAAAGCCTGGGATGAAAAATTTGCCGCGTATGCCAAAGCCTATCCTGAA
TTAGCGGCTGAATTCACCCGCCGCATAGCGAAAAAACTGCCGGCCGACTGGGCAAAAGACTCTCAAGCATTTGTTGAGCA
TTTACAAACCAATCCGGCAAGCATTGCAAGCCGCAAAGCCTCACAAAATGCCATTGAAGCCTACGCCAAAATTTTACCTG
AATTACTGGGCGGTTCTGCCGACTTGGCAAGTTCCAACTTAACCCTTTGGTCCGGTTCCAAACCAATCCGTGCCACCCAA
AACGTTGATGGTAACTACATCAACTACGGCGTGCGCGAATTCGGTATGGCGGGGATCATGAACGGTATCGCCTTGCACGG
CGGCTTCATTCCTTACGGCGCCACCTTCCTGATGTTCATGGAATACGCCCACAACGCCATTCGCATGGCGGCCCTAATGA
AGCAACGTTCCTTATTTGTGTTCACCCACGATTCCATCGGCTTAGGCGAAGACGGCCCGACCCACCAACCGGTAGAACAA
ACTGCGGCATTACGTTTAATTCCTAACTTGAACACATGGCGTCCTTGCGACCAAGTGGAATCCGCCATTGCGTGGAAAGC
GGCGATTGAAAGAACGGATGGTCCAAGCGCCTTAATTTTTACCCGCCAAAACTTGGCGCAGATGGACCGCACTTCCGAGC
AACTGGCAAATGTGGCGCGCGGGGCGTATGTCTTAAAAGATTGTGCCGGTACGCCGGAACTGATCTTTATCGCCACCGGT
TCTGAAGTGGAATTAGCAGTGAAAGCAGCAGAACAATTAACCGCGGAAGGCAAAAAAGTTCGTGTGGTTTCCATGCCAAG
CACCAACGTGTTTGATAAACAAGATGAAGCTTATCGCGAATCCGTGTTGCCTGTCGCCGTGACTAAACGTGTCGCCATTG
AAGCCGGAATTTCCGACTTCTGGTACAAATATGTCGGCTTCAACGGCCGAATCATCGGTATGCACAGCTTCGGCGAATCT
GCACCGGCAGACCAATTATTCAAACTCTTTGGTTTTACGGTGGGTAACGTCGTCGCCAAGGCAAAAGAAATACTCTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(549-656)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-526)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

49.396

99.549

0.492