Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   MQG38_RS07680 Genome accession   NZ_CP093913
Coordinates   1585801..1586460 (-) Length   219 a.a.
NCBI ID   WP_005544952.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 9R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1580801..1591460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG38_RS07645 rpmE 1581222..1581434 (+) 213 WP_005542845.1 50S ribosomal protein L31 -
  MQG38_RS07650 - 1581497..1582189 (+) 693 WP_005544941.1 glycosyltransferase family 25 protein -
  MQG38_RS07655 - 1582190..1583212 (+) 1023 WP_012820860.1 glycosyltransferase family 9 protein -
  MQG38_RS07660 - 1583222..1584274 (+) 1053 WP_005544945.1 glycosyltransferase family 9 protein -
  MQG38_RS07665 mutM 1584277..1585092 (-) 816 WP_005544946.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  MQG38_RS07670 rpmG 1585174..1585344 (-) 171 WP_005544948.1 50S ribosomal protein L33 -
  MQG38_RS07675 rpmB 1585356..1585592 (-) 237 WP_012820861.1 50S ribosomal protein L28 -
  MQG38_RS07680 radC 1585801..1586460 (-) 660 WP_005544952.1 DNA repair protein RadC Machinery gene
  MQG38_RS07685 coaBC 1586638..1587837 (+) 1200 WP_005544954.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  MQG38_RS07690 dut 1587906..1588361 (+) 456 WP_005544956.1 dUTP diphosphatase -
  MQG38_RS07695 slmA 1588361..1588960 (+) 600 WP_005540234.1 nucleoid occlusion factor SlmA -
  MQG38_RS07700 - 1588984..1589202 (+) 219 WP_005544960.1 YheU family protein -
  MQG38_RS07705 crp 1589273..1589884 (+) 612 WP_230583193.1 cAMP-activated global transcriptional regulator CRP Regulator
  MQG38_RS07710 gorA 1590017..1591387 (-) 1371 WP_005544964.1 glutathione-disulfide reductase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24931.08 Da        Isoelectric Point: 7.0210

>NTDB_id=572676 MQG38_RS07680 WP_005544952.1 1585801..1586460(-) (radC) [Aggregatibacter actinomycetemcomitans strain 9R]
MNEALMPREKLLKYGAAALTDDELLAIFLRTGIKDCPVMQLSKNVLQHFGSLRELIRADQKQFCAVKGIGVTQFIQLQAC
TEMTRRYLFAELKETHCFTSTDIVKMYLQTELANIEREIFMVLFLDNQHRLIKQERLFLGTINKAMVYPREIIKEALACN
AAAIILAHNHPSGVAEPSISDKQITDTIRQAADLVDIRVLDHFVIGNGRYFSFAEQNLL

Nucleotide


Download         Length: 660 bp        

>NTDB_id=572676 MQG38_RS07680 WP_005544952.1 1585801..1586460(-) (radC) [Aggregatibacter actinomycetemcomitans strain 9R]
ATGAATGAAGCATTAATGCCAAGGGAAAAGCTATTAAAATACGGTGCTGCCGCTTTGACGGACGATGAACTATTGGCGAT
CTTTTTGCGTACGGGAATTAAGGACTGCCCGGTGATGCAGTTATCGAAAAATGTATTGCAACATTTTGGTTCTTTACGCG
AGTTAATTCGTGCCGACCAAAAGCAGTTTTGCGCTGTGAAAGGCATTGGCGTTACGCAGTTTATTCAGCTGCAAGCCTGT
ACTGAAATGACCCGCCGTTATTTGTTTGCAGAATTAAAAGAGACCCACTGTTTTACTTCAACCGACATTGTGAAAATGTA
CTTACAGACGGAGCTGGCAAATATCGAGCGGGAAATTTTTATGGTGCTTTTTCTGGATAACCAACATCGCCTGATTAAGC
AGGAACGCCTGTTTCTCGGCACCATTAATAAAGCGATGGTGTACCCGCGTGAAATCATTAAAGAAGCCTTGGCTTGTAAT
GCGGCGGCGATTATTTTGGCGCATAATCACCCTTCCGGCGTGGCGGAACCGAGCATTTCCGATAAACAAATTACCGACAC
CATCAGACAGGCGGCGGATTTGGTGGATATTCGCGTGCTGGATCATTTCGTGATCGGCAATGGACGTTATTTTTCCTTTG
CGGAACAAAATCTTCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(99-217)

UPF0758 N-terminal (UPF0758_N)

(3-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

66.972

99.543

0.667