Detailed information NTG0572664

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: MQG38_RS03880
• Genome accession: NZ_CP093913
• Coordinates: 798002..799426 (-)
• Length: 474 a.a.
• NCBI ID: WP_005589188.1
• Uniprot ID: -
• Organism: Aggregatibacter actinomycetemcomitans strain 9R
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 793002..804426

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MQG38_RS03850	-	793784..794134 (-)	351	Protein_739	ferritin	-
MQG38_RS03855	ftnA	794150..794635 (-)	486	WP_005544704.1	non-heme ferritin	-
MQG38_RS03860	-	795456..795905 (-)	450	Protein_741	type II secretion system protein GspD	-
MQG38_RS03865	-	795874..796485 (-)	612	WP_005544699.1	hypothetical protein	-
MQG38_RS03870	-	796783..797589 (-)	807	WP_162199730.1	IS3 family transposase	-
MQG38_RS03875	-	797586..797953 (-)	368	Protein_744	transposase	-
MQG38_RS03880	sbcB	798002..799426 (-)	1425	WP_005589188.1	exodeoxyribonuclease I	Machinery gene
MQG38_RS03885	-	799441..800313 (-)	873	WP_258248149.1	DMT family transporter	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54963.52 Da
• Isoelectric Point: 5.1197

>NTDB_id=572664 MQG38_RS03880 WP_005589188.1 798002..799426(-) (sbcB) [Aggregatibacter actinomycetemcomitans strain 9R]
MAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDEDFNIIGEPIVLYCKQTNDYLPAPEAVLVTGITPQECNEKGLWEPE
FAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPS
FRLEKLTEANGIAHDSAHDAMSDVYATIEMAKLIKRKQPKLFQYFFENRGKKEVEKLIDTAEMMPLVHVSGMLGNYRGNT
TLIAPLTWHPTNKNAVIVCDLTADIDDLLTKSVGELRENLYTKKETLLAAGALPVPLKLIHINKCPIVAPAKTLLPQNAE
RLGIDQELCAQNRQRLQEAKDIRQKVMDIFHQEREFDASDNVETELYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDP
RIPELLFHYRARHFYRTLNRAEQIKWQKYCRKKLDAEALQFEQRLQELAEQYSNNEENLMLLQKVYEYGTKIIG

Nucleotide

• Length: 1425 bp

>NTDB_id=572664 MQG38_RS03880 WP_005589188.1 798002..799426(-) (sbcB) [Aggregatibacter actinomycetemcomitans strain 9R]
ATGGCAAAAAACGACTTTAGTTTTTTTATTTATGATTATGAAAGTTTTGGGGTCAATCCCGCAACGGATCGCCCGGCACA
ATTCGGTGGCATTCGCACTGACGAGGATTTTAATATTATCGGTGAGCCGATTGTTCTTTATTGCAAGCAAACTAACGATT
ATTTGCCTGCACCAGAAGCGGTTTTAGTCACCGGAATTACACCACAGGAATGCAACGAAAAAGGGCTGTGGGAACCCGAA
TTTGCCGCCAAAATTTTACAGGAATTCAGCCGTCCGAATACTTGCGTGATGGGCTTTAATAACATTCGTTATGACGATGA
AATGACCCGTTATACGTTTTACCGTAATTTTATCGATCCTTATGAATACAGCTGGAAAAACGGCAATTCCCGTTGGGATT
TACTGGATTTGGTGCGTGCTTGCTATGCGTTGCGCCCGGACGGTATTGAATGGCCTTTAGATGATGAAGGTATGCCGAGT
TTCCGCCTGGAAAAACTGACAGAGGCCAATGGAATAGCGCACGATAGTGCGCATGATGCCATGTCAGATGTGTATGCCAC
TATTGAAATGGCAAAGCTCATCAAGCGGAAACAGCCTAAATTATTCCAATATTTCTTTGAAAATCGGGGTAAAAAGGAGG
TTGAAAAGCTCATCGATACCGCAGAAATGATGCCATTGGTACATGTGTCGGGAATGTTGGGGAATTATCGCGGAAATACC
ACGTTAATTGCACCTTTAACCTGGCATCCGACGAATAAAAATGCCGTTATTGTCTGTGATTTAACTGCCGATATTGATGA
TTTATTAACAAAATCGGTAGGGGAGTTGCGTGAAAATCTTTACACCAAAAAAGAGACCTTATTGGCTGCCGGTGCATTGC
CTGTGCCATTGAAGCTCATTCATATCAATAAATGTCCGATTGTTGCGCCGGCTAAAACTTTGTTGCCACAAAACGCCGAA
CGTTTAGGTATTGATCAGGAGTTATGTGCGCAAAACCGACAACGTTTGCAGGAAGCAAAAGATATTCGCCAAAAAGTAAT
GGATATTTTTCATCAGGAACGTGAATTTGACGCTTCCGATAATGTTGAAACCGAACTGTATAACGGCTTTTTTAGTGACG
CCGATAAAAACAATATGGCGATTTTACGCAGTTTGGAACCCGAAAAATTGGCTAAACATAATCTTAGTTTTCAAGATCCA
CGAATTCCTGAATTGCTGTTCCATTATCGTGCCAGACATTTCTATCGTACATTGAACCGTGCGGAACAAATTAAATGGCA
AAAATACTGCCGTAAAAAATTAGATGCCGAGGCTTTGCAATTTGAACAACGTCTTCAAGAATTAGCCGAACAATATTCCA
ACAATGAAGAAAATCTTATGTTATTGCAAAAGGTCTATGAATATGGAACGAAAATAATCGGTTAA

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (10-189)

• Exonuclease C-terminal (ExoI_SH3) (209-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	53.648	98.312	0.527