Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MQG44_RS00550 Genome accession   NZ_CP093912
Coordinates   103415..104029 (+) Length   204 a.a.
NCBI ID   WP_005542299.1    Uniprot ID   A0A142G244
Organism   Aggregatibacter actinomycetemcomitans strain 14R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 98415..109029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG44_RS00520 - 99059..99433 (-) 375 WP_005594724.1 transposase -
  MQG44_RS00525 - 99707..100975 (+) 1269 WP_005542307.1 NRAMP family divalent metal transporter -
  MQG44_RS00530 nudB 101081..101527 (+) 447 WP_005595346.1 dihydroneopterin triphosphate diphosphatase -
  MQG44_RS00535 - 101561..102301 (+) 741 WP_005542303.1 YebC/PmpR family DNA-binding transcriptional regulator -
  MQG44_RS00540 - 102313..102723 (+) 411 WP_005542301.1 hypothetical protein -
  MQG44_RS00545 ruvC 102779..103351 (+) 573 WP_005542300.1 crossover junction endodeoxyribonuclease RuvC -
  MQG44_RS00550 ruvA 103415..104029 (+) 615 WP_005542299.1 Holliday junction branch migration protein RuvA Machinery gene
  MQG44_RS00555 ruvB 104044..105057 (+) 1014 WP_005545577.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  MQG44_RS00560 - 105111..105422 (-) 312 WP_005542297.1 DUF5339 domain-containing protein -
  MQG44_RS00565 - 105874..107439 (+) 1566 WP_005549162.1 cytochrome ubiquinol oxidase subunit I -
  MQG44_RS00570 cydB 107454..108590 (+) 1137 WP_005542295.1 cytochrome d ubiquinol oxidase subunit II -
  MQG44_RS00575 - 108602..108700 (+) 99 WP_019518193.1 cytochrome bd oxidase small subunit, CydX/CbdX family -
  MQG44_RS00580 ybgE 108705..108992 (+) 288 WP_005542294.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22687.61 Da        Isoelectric Point: 7.4011

>NTDB_id=572589 MQG44_RS00550 WP_005542299.1 103415..104029(+) (ruvA) [Aggregatibacter actinomycetemcomitans strain 14R]
MIGHLTGILMEKQPPEILLDVQGIGYELLLPMTSFYNLPEVGKQTRLFTHLVVREDAHLLFGFAQKADRTLFRELIKTNG
VGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKTAERLLVELKGKFKEVKTNDFFVQADHLPRFSTEISATVEP
SNEAVAALVALGYKPLDAEKMVKKVSKPELSSEQIIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=572589 MQG44_RS00550 WP_005542299.1 103415..104029(+) (ruvA) [Aggregatibacter actinomycetemcomitans strain 14R]
ATGATTGGTCATCTCACTGGTATTTTAATGGAAAAACAGCCGCCGGAAATTTTGTTGGATGTGCAAGGTATCGGCTATGA
ACTACTGCTGCCGATGACAAGTTTTTATAACTTGCCGGAAGTAGGCAAACAAACCCGTTTATTTACTCATCTGGTGGTAC
GTGAGGATGCCCATTTGTTGTTTGGATTTGCCCAAAAAGCCGACCGCACTTTATTCCGCGAACTGATAAAAACCAATGGT
GTCGGGCCCAAATTGGCGCTGGCGATTTTGTCTGCCATGTCGGTAGATGAATTTGCTTATGCTATTGAACGCGAGGAACT
CTCCCGTTTGGTAAAAATTCCCGGTATCGGCAAGAAAACCGCCGAACGGTTATTGGTGGAGTTAAAAGGCAAATTTAAAG
AAGTAAAAACAAACGACTTCTTCGTGCAGGCGGATCATTTACCTCGTTTTAGTACGGAAATATCGGCGACGGTTGAACCG
TCCAACGAAGCGGTAGCGGCGCTCGTGGCATTAGGTTATAAACCGTTAGACGCGGAAAAAATGGTGAAGAAAGTTTCCAA
ACCTGAACTTTCCAGCGAACAGATCATTCGTGAAGCTCTGAAAGCGGCATTATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(161-202)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142G244

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.407

100

0.363