Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MQG37_RS02090 Genome accession   NZ_CP093911
Coordinates   417487..419484 (+) Length   665 a.a.
NCBI ID   WP_005574886.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 16R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 412487..424484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG37_RS02085 tal 416401..417354 (+) 954 WP_005544407.1 transaldolase -
  MQG37_RS02090 recP/tkt 417487..419484 (+) 1998 WP_005574886.1 transketolase Machinery gene
  MQG37_RS02095 - 419556..419945 (-) 390 WP_005568497.1 RidA family protein -
  MQG37_RS02100 recX 420022..420480 (-) 459 WP_005548507.1 recombination regulator RecX -
  MQG37_RS02105 recA 420562..421620 (-) 1059 WP_005544399.1 recombinase RecA Machinery gene
  MQG37_RS02110 - 421768..423693 (-) 1926 WP_258286314.1 ABC transporter ATP-binding protein -
  MQG37_RS02115 - 423774..424391 (+) 618 WP_005568493.1 MarC family protein -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 72754.39 Da        Isoelectric Point: 6.3130

>NTDB_id=572547 MQG37_RS02090 WP_005574886.1 417487..419484(+) (recP/tkt) [Aggregatibacter actinomycetemcomitans strain 16R]
MSNRQQLANAIRFLSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLHHNPTNPQWANRDRFVLSNGHGSMLIYSLLHLSGY
DLSIEDLKQFRQLHSKTPGHPEYGYTPGVETTTGPLGQGISNAVGMAIAEKTLAGQFNRDGHNIVDHYTYAFLGDGCLME
GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTQKRFEAYGWQVIPAIDGHNPAQIAEAIKQAQAETAKPTL
IICKTIIGFGSPNKSNSHDSHGAPLGDEEIALTRKALHWDYAPFEIPADIYAQWDTKAKGAEWEKAWDEKFAAYAKAYPE
LAAEFTRRIAKKLPADWAKDSQAFVEHLQANPASIASRKASQNAIEAYAKILPELLGGSADLASSNLTLWSGSKPIRATQ
NVDGNYINYGVREFGMAGIMNGIALHGGFIPYGATFLMFMEYAHNAIRMAALMKQRSLFVFTHDSIGLGEDGPTHQPVEQ
TAALRLIPNLNTWRPCDQVESAIAWKAAIERTDGPSALIFTRQNLAQMDRTSEQLANVARGAYVLKDCAGTPELIFIATG
SEVELAVKAAEQLTAEGKKVRVVSMPSTNVFDKQDEAYRESVLPVAVTKRVAIEAGISDFWYKYVGFNGRIIGMHSFGES
APADQLFKLFGFTVGNVVAKAKEIL

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=572547 MQG37_RS02090 WP_005574886.1 417487..419484(+) (recP/tkt) [Aggregatibacter actinomycetemcomitans strain 16R]
ATGTCAAATCGTCAACAACTCGCCAATGCAATTCGTTTTTTAAGTATGGATGCGGTACAAAAAGCGAAATCCGGTCACCC
GGGCGCACCTATGGGCATGGCGGATATCGCCGAAGTATTATGGCGTGATTTTTTACACCACAACCCGACCAACCCGCAAT
GGGCTAACCGCGACCGTTTTGTGCTGTCCAACGGACACGGTTCCATGCTGATTTACAGCTTATTACACCTCAGCGGTTAC
GATTTATCCATCGAAGATTTAAAACAATTCCGTCAACTGCACTCCAAAACACCGGGCCATCCTGAATACGGCTACACCCC
CGGTGTCGAAACCACCACCGGCCCGTTAGGTCAAGGCATTAGTAATGCGGTGGGGATGGCAATTGCGGAAAAAACCCTTG
CCGGTCAATTTAACCGTGACGGTCATAACATCGTTGATCACTATACTTACGCCTTTTTAGGCGACGGTTGTTTAATGGAG
GGGATTTCCCACGAAGCCTGTTCTTTAGCGGGAACCTTAGGTTTGGGTAAATTAATCGCATTCTATGATGACAACAATAT
CTCTATCGACGGACACGTTGACGGCTGGTTCACCGACGACACACAAAAACGCTTTGAAGCGTACGGCTGGCAAGTGATTC
CGGCAATCGACGGTCACAATCCGGCACAAATTGCCGAAGCCATCAAACAAGCGCAAGCGGAAACCGCCAAACCAACATTA
ATTATCTGTAAAACCATTATCGGTTTCGGTTCACCAAATAAATCCAACTCTCATGACAGCCACGGCGCGCCGTTAGGCGA
CGAAGAAATCGCTTTAACCCGCAAAGCGTTACATTGGGATTATGCCCCGTTTGAAATTCCGGCGGACATTTATGCGCAAT
GGGATACCAAAGCAAAAGGCGCGGAATGGGAAAAAGCCTGGGATGAAAAATTTGCCGCGTATGCCAAAGCCTATCCTGAA
TTAGCGGCTGAATTCACCCGCCGCATAGCGAAAAAACTGCCGGCCGACTGGGCAAAAGACTCTCAAGCATTTGTTGAGCA
TTTACAAGCCAATCCGGCAAGCATTGCAAGCCGCAAAGCCTCACAAAATGCCATTGAAGCCTACGCCAAAATTTTACCTG
AATTACTGGGCGGTTCTGCCGACTTGGCAAGTTCCAACTTAACCCTTTGGTCCGGTTCCAAACCAATCCGTGCCACCCAA
AACGTTGATGGTAACTACATCAACTACGGCGTGCGCGAATTCGGTATGGCGGGGATCATGAACGGTATCGCCTTGCACGG
CGGCTTCATTCCTTACGGCGCCACCTTCCTGATGTTCATGGAATACGCCCACAACGCCATTCGCATGGCGGCCCTAATGA
AGCAACGTTCCTTATTTGTGTTCACCCACGATTCCATCGGCTTAGGCGAAGACGGCCCGACCCACCAACCGGTAGAACAA
ACTGCGGCATTACGTTTAATTCCTAACTTGAACACATGGCGTCCTTGCGACCAAGTGGAATCCGCCATTGCGTGGAAAGC
GGCGATTGAAAGAACGGATGGTCCAAGCGCCTTAATTTTTACCCGCCAAAACTTGGCGCAGATGGACCGCACTTCCGAGC
AACTGGCAAATGTGGCGCGCGGGGCGTATGTCTTAAAAGATTGTGCCGGTACGCCGGAACTGATCTTTATCGCCACCGGT
TCTGAAGTGGAATTAGCAGTGAAAGCAGCAGAACAATTAACCGCGGAAGGCAAAAAAGTTCGTGTGGTTTCCATGCCAAG
CACCAACGTGTTTGATAAACAAGATGAAGCTTATCGCGAATCCGTGTTGCCTGTCGCCGTGACTAAACGTGTCGCCATTG
AAGCCGGAATTTCCGACTTCTGGTACAAATATGTCGGCTTCAACGGCCGAATCATCGGTATGCACAGCTTCGGCGAATCT
GCACCGGCAGACCAATTATTCAAACTCTTTGGTTTTACGGTGGGTAACGTCGTCGCCAAGGCAAAAGAAATACTCTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(549-656)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-526)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

49.396

99.549

0.492