Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   CPY99_RS14705 Genome accession   NZ_AP017620
Coordinates   2922861..2923853 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain MRY15-131     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2917861..2928853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPY99_RS14670 (MRY15131_c26880) pphB 2918445..2919035 (+) 591 Protein_2745 protein-serine/threonine phosphatase -
  CPY99_RS26990 - 2919806..2919877 (+) 72 Protein_2747 serine/threonine protein phosphatase -
  CPY99_RS14685 (MRY15131_c26910) - 2919919..2920155 (-) 237 WP_000562981.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  CPY99_RS14690 (MRY15131_c26920) - 2920166..2921593 (-) 1428 WP_000863203.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  CPY99_RS14695 (MRY15131_c26930) - 2921593..2922186 (-) 594 WP_001237173.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  CPY99_RS14700 (MRY15131_c26940) - 2922333..2922740 (+) 408 WP_001208071.1 MarR family transcriptional regulator -
  CPY99_RS14705 (MRY15131_c26950) rpoS 2922861..2923853 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  CPY99_RS14710 (MRY15131_c26960) nlpD 2923916..2925010 (-) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  CPY99_RS14715 (MRY15131_c26970) pcm 2925195..2925821 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  CPY99_RS14720 (MRY15131_c26980) surE 2925815..2926576 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  CPY99_RS14725 (MRY15131_c26990) truD 2926557..2927606 (-) 1050 WP_000568908.1 tRNA pseudouridine(13) synthase TruD -
  CPY99_RS14730 (MRY15131_c27000) ispF 2927603..2928082 (-) 480 WP_001219237.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CPY99_RS14735 (MRY15131_c27010) ispD 2928082..2928792 (-) 711 WP_000246153.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=57247 CPY99_RS14705 WP_000081550.1 2922861..2923853(-) (rpoS) [Escherichia coli strain MRY15-131]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=57247 CPY99_RS14705 WP_000081550.1 2922861..2923853(-) (rpoS) [Escherichia coli strain MRY15-131]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715