Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   KM409_RS25700 Genome accession   NZ_CP076141
Coordinates   4873655..4874236 (+) Length   193 a.a.
NCBI ID   WP_001049158.1    Uniprot ID   -
Organism   Bacillus anthracis strain A29     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4868655..4879236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM409_RS25665 (KM409_25660) - 4869649..4869855 (+) 207 WP_000216166.1 DUF1657 domain-containing protein -
  KM409_RS25670 (KM409_25665) - 4869949..4870434 (+) 486 WP_001228539.1 YhcN/YlaJ family sporulation lipoprotein -
  KM409_RS25675 (KM409_25670) spoVAC 4870465..4870941 (+) 477 WP_000095399.1 stage V sporulation protein AC -
  KM409_RS25680 (KM409_25675) spoVAD 4870942..4871958 (+) 1017 WP_000938967.1 stage V sporulation protein AD -
  KM409_RS25685 (KM409_25680) spoVAE 4871955..4872305 (+) 351 WP_000575919.1 stage V sporulation protein AE -
  KM409_RS25690 (KM409_25685) - 4872317..4872523 (+) 207 WP_000215915.1 DUF1657 domain-containing protein -
  KM409_RS25695 (KM409_25690) - 4872544..4873413 (+) 870 WP_000018934.1 DUF421 domain-containing protein -
  KM409_RS25700 (KM409_25695) clpP 4873655..4874236 (+) 582 WP_001049158.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  KM409_RS25705 (KM409_25700) - 4874560..4874808 (-) 249 WP_000250307.1 HPr family phosphocarrier protein -
  KM409_RS25710 (KM409_25705) whiA 4874832..4875782 (-) 951 WP_000006561.1 DNA-binding protein WhiA -
  KM409_RS25715 (KM409_25710) - 4875872..4876825 (-) 954 WP_000712177.1 gluconeogenesis factor YvcK family protein -
  KM409_RS25720 (KM409_25715) rapZ 4876829..4877710 (-) 882 WP_000138464.1 RNase adapter RapZ -
  KM409_RS25725 (KM409_25720) - 4877731..4878189 (-) 459 WP_001190080.1 NUDIX hydrolase -
  KM409_RS25730 (KM409_25725) - 4878418..4879224 (-) 807 WP_000455202.1 DUF368 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21391.62 Da        Isoelectric Point: 5.0423

>NTDB_id=572415 KM409_RS25700 WP_001049158.1 4873655..4874236(+) (clpP) [Bacillus anthracis strain A29]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEAMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=572415 KM409_RS25700 WP_001049158.1 4873655..4874236(+) (clpP) [Bacillus anthracis strain A29]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGTATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCTGAAAAAGATATTCATATCTACATCAACAGCCCTGGTGGTTCTATCACAGCAGGTATGGCAATTTACGATACA
ATGCAGTTTATTAAACCGCAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGCAATGATTCACCAACCACTTGGTGGGGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCTAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAAAGCTTTAGAATACGGTTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

89.583

99.482

0.891
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554