Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MPJ80_RS06835 Genome accession   NZ_CP093548
Coordinates   1329926..1331353 (+) Length   475 a.a.
NCBI ID   WP_072198855.1    Uniprot ID   -
Organism   Escherichia coli strain YL03     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1324926..1336353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPJ80_RS06795 (MPJ80_06785) yeeW 1325110..1325304 (+) 195 WP_000988600.1 DUF5983 family protein -
  MPJ80_RS06800 (MPJ80_06790) - 1325338..1325430 (+) 93 Protein_1350 DUF957 domain-containing protein -
  MPJ80_RS06805 (MPJ80_06795) - 1325719..1325847 (-) 129 Protein_1351 transposase domain-containing protein -
  MPJ80_RS06810 (MPJ80_06800) - 1325919..1326101 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  MPJ80_RS06815 (MPJ80_06805) tmaR 1326202..1326531 (-) 330 WP_000450409.1 DUF496 family protein -
  MPJ80_RS06820 (MPJ80_06810) yeeA 1326703..1327761 (-) 1059 WP_001200891.1 FUSC family protein -
  MPJ80_RS06825 (MPJ80_06815) sbmC 1327959..1328432 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  MPJ80_RS06830 (MPJ80_06820) dacD 1328551..1329717 (-) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MPJ80_RS06835 (MPJ80_06825) sbcB 1329926..1331353 (+) 1428 WP_072198855.1 exodeoxyribonuclease I Machinery gene
  MPJ80_RS06840 (MPJ80_06830) tsuB 1331396..1331616 (-) 221 Protein_1358 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MPJ80_RS06845 (MPJ80_06835) tsuA 1331630..1332688 (-) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  MPJ80_RS06850 (MPJ80_06840) plaP 1332867..1334225 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MPJ80_RS06855 (MPJ80_06845) yoeI 1334215..1334277 (-) 63 WP_010723108.1 membrane protein YoeI -
  MPJ80_RS06860 (MPJ80_06850) yeeY 1334492..1335421 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  MPJ80_RS06865 (MPJ80_06855) yeeZ 1335467..1336291 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.80 Da        Isoelectric Point: 5.6070

>NTDB_id=572410 MPJ80_RS06835 WP_072198855.1 1329926..1331353(+) (sbcB) [Escherichia coli strain YL03]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=572410 MPJ80_RS06835 WP_072198855.1 1329926..1331353(+) (sbcB) [Escherichia coli strain YL03]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579