Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MNY32_RS04740 Genome accession   NZ_CP093535
Coordinates   1025775..1026395 (-) Length   206 a.a.
NCBI ID   WP_011002444.1    Uniprot ID   Q8XWE6
Organism   Ralstonia pseudosolanacearum strain SL1931     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1020775..1031395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY32_RS04710 (MNY32_04710) - 1021276..1022034 (-) 759 WP_019718335.1 3-hydroxyacyl-CoA dehydrogenase -
  MNY32_RS04715 (MNY32_04715) adk 1022194..1022862 (-) 669 WP_011002448.1 adenylate kinase -
  MNY32_RS04720 (MNY32_04720) kdsB 1023182..1023988 (-) 807 WP_016725950.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MNY32_RS04725 (MNY32_04725) - 1024007..1024195 (-) 189 WP_003266270.1 Trm112 family protein -
  MNY32_RS04730 (MNY32_04730) lpxK 1024256..1025305 (-) 1050 WP_021155356.1 tetraacyldisaccharide 4'-kinase -
  MNY32_RS04735 (MNY32_04735) - 1025321..1025752 (-) 432 WP_011002445.1 ExbD/TolR family protein -
  MNY32_RS04740 (MNY32_04740) exbB 1025775..1026395 (-) 621 WP_011002444.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MNY32_RS04745 (MNY32_04745) xseA 1028020..1029435 (+) 1416 WP_019718337.1 exodeoxyribonuclease VII large subunit -
  MNY32_RS04750 (MNY32_04750) sodB 1029581..1030159 (+) 579 WP_016724102.1 superoxide dismutase [Fe] -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22288.15 Da        Isoelectric Point: 9.3208

>NTDB_id=572355 MNY32_RS04740 WP_011002444.1 1025775..1026395(-) (exbB) [Ralstonia pseudosolanacearum strain SL1931]
MFSIIQAAGWPIWPLLIASVLALALIIERFVALQRKKIIPPKVYDEALAVAHQRKATPEVVNTLEQGSPLGRVLAAALRH
VVLHPATTREAAKEVVEEAGQNVAHRLERYLNALGTIASVAPLMGLFGTVVGMIEIFGSQTAAGTNPQTLAHGISVALYN
TALGLVVAIPTLIFWRYFRGVVDSYVVELEHLSATYLDAILPPRRG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=572355 MNY32_RS04740 WP_011002444.1 1025775..1026395(-) (exbB) [Ralstonia pseudosolanacearum strain SL1931]
GTGTTTTCCATCATCCAAGCCGCCGGCTGGCCGATCTGGCCGCTGCTGATTGCCTCGGTGCTCGCCCTGGCGCTCATCAT
CGAACGCTTCGTCGCCTTGCAGCGCAAGAAGATCATTCCTCCCAAGGTGTATGACGAGGCCCTGGCGGTGGCACACCAGC
GCAAGGCGACGCCGGAAGTCGTGAACACGCTGGAACAGGGCTCGCCGCTGGGCCGCGTGCTGGCCGCCGCACTGCGCCAC
GTGGTGCTGCATCCGGCCACCACGCGCGAAGCCGCCAAGGAAGTGGTGGAAGAAGCCGGCCAGAACGTCGCTCACCGCCT
GGAGCGCTACCTGAACGCACTCGGCACCATCGCCTCGGTGGCGCCGCTGATGGGTCTGTTCGGCACCGTGGTCGGCATGA
TCGAGATCTTCGGCAGCCAGACCGCCGCCGGCACCAACCCGCAGACGCTCGCGCACGGCATCTCGGTCGCGCTGTACAAC
ACGGCGCTGGGCCTGGTGGTGGCCATCCCGACGCTGATCTTCTGGCGCTACTTCCGTGGCGTGGTCGACAGCTACGTGGT
CGAACTCGAGCACCTGTCCGCCACGTACCTCGACGCGATCCTGCCGCCGCGGCGCGGCTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XWE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

40.488

99.515

0.403