Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F11EC_RS10675 Genome accession   NZ_CP076123
Coordinates   2211240..2211869 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain F11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2206240..2216869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F11EC_RS10660 (F11EC_02091) helD 2206482..2208536 (-) 2055 WP_001541157.1 DNA helicase IV -
  F11EC_RS10665 (F11EC_02092) yccF 2208659..2209105 (+) 447 WP_001261235.1 YccF domain-containing protein -
  F11EC_RS10670 (F11EC_02093) yccS 2209115..2211277 (+) 2163 WP_000875067.1 YccS family putative transporter -
  F11EC_RS10675 (F11EC_02094) sxy/tfoX 2211240..2211869 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  F11EC_RS10680 (F11EC_02095) sulA 2212088..2212597 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  F11EC_RS10685 (F11EC_02096) ompA 2212953..2213993 (+) 1041 WP_001313715.1 porin OmpA -
  F11EC_RS10690 (F11EC_02097) matP 2214069..2214521 (-) 453 WP_000877152.1 macrodomain Ter protein MatP -
  F11EC_RS10695 (F11EC_02098) ycbZ 2214707..2216467 (+) 1761 WP_000156496.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=572155 F11EC_RS10675 WP_000839153.1 2211240..2211869(-) (sxy/tfoX) [Escherichia coli strain F11]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=572155 F11EC_RS10675 WP_000839153.1 2211240..2211869(-) (sxy/tfoX) [Escherichia coli strain F11]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1