Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   KM132_RS13440 Genome accession   NZ_CP076119
Coordinates   2755741..2756493 (-) Length   250 a.a.
NCBI ID   WP_129090980.1    Uniprot ID   -
Organism   Bacillus velezensis strain NZ4     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2750741..2761493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM132_RS13415 (KM132_13415) mreC 2751177..2752040 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  KM132_RS13420 (KM132_13420) mreB 2752071..2753084 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  KM132_RS13425 (KM132_13425) radC 2753176..2753871 (-) 696 WP_007408165.1 DNA repair protein RadC -
  KM132_RS13430 (KM132_13430) - 2753903..2754472 (-) 570 WP_012118105.1 Maf family protein -
  KM132_RS13435 (KM132_13435) - 2754613..2755614 (-) 1002 WP_031378909.1 SPOR domain-containing protein -
  KM132_RS13440 (KM132_13440) comC 2755741..2756493 (-) 753 WP_129090980.1 A24 family peptidase Machinery gene
  KM132_RS13445 (KM132_13445) - 2756633..2757925 (-) 1293 WP_154817585.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  KM132_RS13450 (KM132_13450) - 2757984..2760626 (-) 2643 WP_022552877.1 valine--tRNA ligase -
  KM132_RS13455 (KM132_13455) - 2761079..2761270 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27227.94 Da        Isoelectric Point: 9.4293

>NTDB_id=572126 KM132_RS13440 WP_129090980.1 2755741..2756493(-) (comC) [Bacillus velezensis strain NZ4]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=572126 KM132_RS13440 WP_129090980.1 2755741..2756493(-) (comC) [Bacillus velezensis strain NZ4]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAACTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATTGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58