Detailed information NTG0572068

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: KMZ31_RS17725
• Genome accession: NZ_CP076117
• Coordinates: 3581729..3582874 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain CQN-2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3576729..3587874

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KMZ31_RS17705 (KMZ31_17570)	-	3577626..3578054 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
KMZ31_RS17710 (KMZ31_17575)	-	3578208..3578720 (+)	513	Protein_3435	bacteriocin biosynthesis protein AlbG	-
KMZ31_RS17715 (KMZ31_17580)	-	3578727..3580103 (-)	1377	WP_032875890.1	YncE family protein	-
KMZ31_RS17720 (KMZ31_17585)	-	3580143..3581498 (-)	1356	WP_032875887.1	YncE family protein	-
KMZ31_RS17725 (KMZ31_17590)	rapF	3581729..3582874 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
KMZ31_RS17730 (KMZ31_17595)	-	3582858..3582977 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
KMZ31_RS17735 (KMZ31_17600)	speB	3583100..3583972 (-)	873	WP_032875884.1	agmatinase	-
KMZ31_RS17740 (KMZ31_17605)	speE	3584031..3584861 (-)	831	WP_003151052.1	spermidine synthase	-
KMZ31_RS17745 (KMZ31_17610)	-	3585061..3587133 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
KMZ31_RS17750 (KMZ31_17615)	-	3587158..3587591 (-)	434	Protein_3443	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=572068 KMZ31_RS17725 WP_074534220.1 3581729..3582874(+) (rapF) [Bacillus amyloliquefaciens strain CQN-2]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=572068 KMZ31_RS17725 WP_074534220.1 3581729..3582874(+) (rapF) [Bacillus amyloliquefaciens strain CQN-2]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541