Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KM294_RS20820 Genome accession   NZ_CP076110
Coordinates   4327013..4327609 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KpIM03_1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4322013..4332609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM294_RS20800 (KM294_20795) - 4322205..4323962 (-) 1758 WP_073557905.1 Lon protease family protein -
  KM294_RS20805 (KM294_20800) matP 4324148..4324600 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  KM294_RS20810 (KM294_20805) ompA 4324732..4325802 (-) 1071 WP_002898408.1 porin OmpA -
  KM294_RS20815 (KM294_20810) sulA 4326155..4326664 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  KM294_RS20820 (KM294_20815) sxy/tfoX 4327013..4327609 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  KM294_RS20825 (KM294_20820) yccS 4327623..4329758 (-) 2136 WP_073557904.1 YccS family putative transporter -
  KM294_RS20830 (KM294_20825) - 4329776..4330222 (-) 447 WP_002898425.1 YccF domain-containing protein -
  KM294_RS20835 (KM294_20830) helD 4330347..4332401 (+) 2055 WP_014907883.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=571942 KM294_RS20820 WP_004179217.1 4327013..4327609(+) (sxy/tfoX) [Klebsiella pneumoniae strain KpIM03_1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=571942 KM294_RS20820 WP_004179217.1 4327013..4327609(+) (sxy/tfoX) [Klebsiella pneumoniae strain KpIM03_1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGATGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51