Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   MN179_RS28020 Genome accession   NZ_CP093357
Coordinates   6021087..6021683 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain E131     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6016087..6026683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN179_RS28000 (MN179_28000) aroK 6017218..6017736 (-) 519 WP_003095833.1 shikimate kinase AroK -
  MN179_RS28005 (MN179_28005) pilQ 6017748..6019892 (-) 2145 WP_023114914.1 type 4a pilus secretin PilQ Machinery gene
  MN179_RS28010 (MN179_28010) comL/pilP 6019946..6020470 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  MN179_RS28015 (MN179_28015) pilO 6020467..6021090 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  MN179_RS28020 (MN179_28020) pilN 6021087..6021683 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  MN179_RS28025 (MN179_28025) pilM 6021683..6022747 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  MN179_RS28030 (MN179_28030) - 6022932..6025403 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=571759 MN179_RS28020 WP_003095839.1 6021087..6021683(-) (pilN) [Pseudomonas aeruginosa strain E131]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=571759 MN179_RS28020 WP_003095839.1 6021087..6021683(-) (pilN) [Pseudomonas aeruginosa strain E131]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAAGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369