Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   KBK05_RS02725 Genome accession   NZ_CP076082
Coordinates   510278..511165 (-) Length   295 a.a.
NCBI ID   WP_215509612.1    Uniprot ID   -
Organism   Limosilactobacillus fermentum strain 9-4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 505278..516165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBK05_RS02705 - 505390..505566 (-) 177 WP_003682971.1 hypothetical protein -
  KBK05_RS02710 - 505574..506431 (-) 858 WP_215509610.1 alpha/beta hydrolase -
  KBK05_RS02715 - 506570..508918 (-) 2349 WP_215509611.1 ATP-binding protein -
  KBK05_RS02720 - 509300..510187 (+) 888 WP_046025989.1 3-hydroxyacyl-CoA dehydrogenase -
  KBK05_RS02725 endA 510278..511165 (-) 888 WP_215509612.1 DNA/RNA non-specific endonuclease Machinery gene
  KBK05_RS02730 - 511240..512610 (-) 1371 WP_215509613.1 C69 family dipeptidase -
  KBK05_RS02735 - 512610..513305 (-) 696 WP_252265512.1 hypothetical protein -
  KBK05_RS02740 - 513461..514846 (-) 1386 WP_215509615.1 amino acid permease -
  KBK05_RS02745 - 515120..516082 (-) 963 WP_215509616.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32072.83 Da        Isoelectric Point: 10.8214

>NTDB_id=571758 KBK05_RS02725 WP_215509612.1 510278..511165(-) (endA) [Limosilactobacillus fermentum strain 9-4]
MKRRRNKKQGWRWLIAFVILFALASGIPGKASSTTTTSSPSAQTLVAKVNSLVENLSYRSRSSSTSGSSTMVTPSKQKAE
AVLTANVKQQLGSSITWNGDGAFIINNNKTKLNAKINSAPYAVDRLDSQGRAWQGDAWLNKTTRQYKNRSETGNGATSWR
PVGFMQLTNLKNGPTHAYDRGHLLGYALVGGLSGFNASESNPKNIATQTAWANEARSTDSTGQNYYEGLVRKALDRGKQV
RYRVTDIYDGNNLVPSGAHIEAKSKDGSLQFNVFVPNVQNNITINYATGKATATN

Nucleotide


Download         Length: 888 bp        

>NTDB_id=571758 KBK05_RS02725 WP_215509612.1 510278..511165(-) (endA) [Limosilactobacillus fermentum strain 9-4]
ATGAAACGCCGACGTAACAAGAAGCAGGGCTGGCGCTGGTTAATTGCCTTCGTCATCCTCTTCGCCCTTGCCTCGGGTAT
CCCGGGCAAGGCATCTTCTACGACCACCACTAGTTCACCGAGTGCCCAAACTCTGGTTGCCAAGGTCAACTCCCTGGTGG
AAAACCTAAGCTACCGGTCGCGCTCGTCGTCAACCAGCGGCTCGAGCACGATGGTTACCCCGAGCAAGCAAAAGGCCGAG
GCGGTTTTAACCGCCAACGTTAAGCAACAACTGGGGAGTTCGATCACTTGGAATGGCGATGGGGCCTTCATTATCAACAA
CAATAAGACCAAGCTCAACGCCAAGATCAACAGCGCGCCCTACGCCGTTGACCGGCTCGACAGCCAGGGGCGTGCTTGGC
AGGGCGATGCTTGGTTAAACAAAACGACGCGCCAATACAAGAATCGTTCCGAAACCGGGAACGGCGCCACTAGTTGGAGA
CCGGTCGGCTTTATGCAACTGACCAACTTAAAGAACGGCCCGACCCACGCTTATGACCGGGGGCACCTACTCGGCTACGC
CTTGGTCGGGGGGCTCTCCGGTTTCAACGCTTCGGAGTCCAACCCGAAAAACATCGCCACCCAAACCGCTTGGGCTAACG
AAGCCCGGTCAACCGATTCAACCGGGCAAAACTACTACGAAGGCCTAGTTCGCAAGGCCCTCGACCGGGGTAAGCAAGTC
CGCTACCGGGTAACCGACATTTATGACGGTAACAACCTAGTTCCGTCCGGCGCCCACATTGAGGCCAAGTCAAAGGACGG
CAGCCTCCAGTTCAACGTCTTTGTTCCGAACGTTCAAAATAACATTACGATCAATTACGCCACCGGGAAGGCCACCGCTA
CTAACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(127-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

57.028

84.407

0.481
  endA Streptococcus pneumoniae D39

57.028

84.407

0.481
  endA Streptococcus pneumoniae R6

57.028

84.407

0.481
  endA Streptococcus pneumoniae TIGR4

57.028

84.407

0.481